Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 341 a.a., ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, periplasmic substrate-binding component (from data) from Sinorhizobium meliloti 1021

 Score =  385 bits (988), Expect = e-111
 Identities = 185/337 (54%), Positives = 238/337 (70%), Gaps = 4/337 (1%)

Query: 4   SVLFGALAAAGLAATGAAADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFDVAVCR 63
           + L GA A  G+    A+A TL++V+A+G V CG++TGL GFA+ DA+G W GFDV  C+
Sbjct: 7   TALVGA-AVVGIGTHAASAATLDDVKAKGFVQCGVNTGLAGFAAPDASGNWSGFDVDYCK 65

Query: 64  AVAAAVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTGINYYD 123
           A+AAA+FGD + V + P++ + RF  L SGE+D+LARNTTW+ +RD  L   F  +NYYD
Sbjct: 66  AIAAAIFGDGSKVKYTPLSAKERFPALQSGEVDVLARNTTWSINRDTALGFNFRPVNYYD 125

Query: 124 GQGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTASEAQQQ 183
           GQGFMV K L V SA EL GA VC+Q GTTTELNLAD+F+ANN+ + PV      E    
Sbjct: 126 GQGFMVRKELDVKSALELSGAAVCVQTGTTTELNLADYFKANNLQYNPVVFEKLEEVNAA 185

Query: 184 YLAGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGDIVRWTL 243
           Y AG CDVYTTD SGL + R +   PD+H+VLPEIISKEPL P VR GD++W DIV W  
Sbjct: 186 YDAGRCDVYTTDQSGLYSLRLTLSKPDDHIVLPEIISKEPLAPAVRQGDDQWFDIVSWVH 245

Query: 244 NALIAAEELGVTSANVAELAAGTDNPEINRLLGTEGN--LGEQLGLSADWAVNVIKAGGN 301
            AL+ AEE GVT AN+ E+   T NP++ R LG E +  +G  LGL+ +WAVN++KA GN
Sbjct: 246 YALVQAEEFGVTQANLEEMKKST-NPDVQRFLGVEADSKIGTDLGLTNEWAVNIVKAVGN 304

Query: 302 YGEIFETHIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
           YGE+F+ +IG  +P+ + RGLNA W +GGL YAPP R
Sbjct: 305 YGEVFDRNIGAGSPLKIERGLNALWNKGGLQYAPPVR 341