Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 373 a.a., extracellular solute-binding protein, family 3 (NCBI) from Rhodospirillum rubrum S1H

 Score =  256 bits (655), Expect = 5e-73
 Identities = 141/337 (41%), Positives = 197/337 (58%), Gaps = 7/337 (2%)

Query: 7   FGALAAAGLAATGAAA--DTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFDVAVCRA 64
           FG +AA  LAA   AA  DTL  ++ RG+V CG +  + GF   D++G W+GF +  CRA
Sbjct: 39  FGLVAALTLAAPALAANGDTLTSIRDRGSVTCGTNP-IPGFGFPDSDGNWRGFFIDFCRA 97

Query: 65  VAAAVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTGINYYDG 124
           +AAA  GDPTA    PV +  R+E LNS   D+    +TWT SRD  L  +F G+  YDG
Sbjct: 98  LAAATLGDPTAFEVVPVESNSRWEALNSHTTDVNVDGSTWTLSRDTALGFDFPGVLIYDG 157

Query: 125 QGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTASEAQQQY 184
           Q F+   ++   S     G  VCI  GTT E+NL DF + N++    +   +   A   +
Sbjct: 158 QRFLAKPSVPEGSVKAAAGLRVCIIMGTTAEVNLRDFLKKNDLEMTVIATESDEGAWTSF 217

Query: 185 LAGACDVYTTDASGLAATRASFESPDE-HVVLPEIISKEPLGPLVRHGDNEWGDIVRWTL 243
           L G C+++  D  GLA   A   +P   + ++ E ISKEPLGP+VR  D++W +I RW L
Sbjct: 218 LKGRCELFVNDGIGLALRNALHMTPPRVNHLMTEAISKEPLGPVVRGDDHQWLEINRWVL 277

Query: 244 NALIAAEELGVTSANVAELAAGTDNPEINRLL--GTEGNLGEQLGLSADWAVNVIKAGGN 301
           N LIAAEE G++S  + + +   D    +R+   G E N    LGL   WA  VI A GN
Sbjct: 278 NVLIAAEEAGISSTTLVDPSPTADLSSEDRVFVGGPEDN-AAALGLEPGWARRVIAAVGN 336

Query: 302 YGEIFETHIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
           YGE+F+ ++G+ + IGL RG+NA W+EGGL+ +PP +
Sbjct: 337 YGEVFDRNLGKGSEIGLDRGVNALWSEGGLMISPPLQ 373