Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 340 a.a., Lysine-arginine-ornithine-binding periplasmic protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  392 bits (1006), Expect = e-114
 Identities = 196/341 (57%), Positives = 245/341 (71%), Gaps = 4/341 (1%)

Query: 1   MKKSVL-FGALAAAGLAATGAA--ADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGF 57
           MKK +    A  AAG+ A+G+A  A TL+ V++RG V CG++ GL GFA  D  G W G 
Sbjct: 1   MKKMIAALAAFGAAGVIASGSAMAASTLDTVKSRGEVTCGVNNGLPGFALPDDKGHWTGI 60

Query: 58  DVAVCRAVAAAVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFT 117
           DV +CRAVAAAVFGD   V F P+  + RF  L SGEID+L+RNTTWT +RD  L L F 
Sbjct: 61  DVDICRAVAAAVFGDAKKVKFVPLNAKERFTALQSGEIDVLSRNTTWTQTRDASLGLIFA 120

Query: 118 GINYYDGQGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTA 177
           G+NYYDGQGFMV K LGVSSA EL+GA++CIQ GTTTELNLAD+FRAN +++ PV   T+
Sbjct: 121 GVNYYDGQGFMVKKELGVSSAKELNGASICIQSGTTTELNLADYFRANAMTYSPVVFDTS 180

Query: 178 SEAQQQYLAGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGD 237
            +  Q +  G CDV T+D S L A R   E P   +VLPE+ISKEPLGP+VR GD++W +
Sbjct: 181 DQTVQGFAGGRCDVLTSDQSQLYALRIKLEDPKSAIVLPEVISKEPLGPMVRQGDDQWLN 240

Query: 238 IVRWTLNALIAAEELGVTSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIK 297
           IVRW+L A + AEELGVTSAN  E+ AGTD   + RLLGTEG +G+QLGL  DWA  ++K
Sbjct: 241 IVRWSLFAQLNAEELGVTSANADEVKAGTDQ-NVKRLLGTEGEMGKQLGLGNDWAYAIVK 299

Query: 298 AGGNYGEIFETHIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
             GNYGE+FE +IG+ +P+ + RGLNA W +GG+ YAPP R
Sbjct: 300 QVGNYGEMFERNIGKGSPLEIERGLNALWNKGGIQYAPPIR 340