Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 350 a.a., extracellular solute-binding protein, family 3 (NCBI) from Rhodospirillum rubrum S1H

 Score =  318 bits (814), Expect = 2e-91
 Identities = 156/330 (47%), Positives = 214/330 (64%), Gaps = 1/330 (0%)

Query: 9   ALAAAGLAATGAAADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFDVAVCRAVAAA 68
           AL   G +++  A +TL+ ++ARG +  G+     GF++ D+ G WQGF + + RA+A  
Sbjct: 22  ALCGLGFSSSAEAGETLDAIKARGVIKIGVGGNSPGFSAPDSAGRWQGFFIDIGRALAVT 81

Query: 69  VFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTGINYYDGQGFM 128
           VF DP    F   + Q R   L SGE D+L    T T +R   L   F  + +YDGQG +
Sbjct: 82  VFNDPEKAEFVNSSPQQRLPALQSGEFDILLSGVTQTITRATKLGFHFGPVVFYDGQGLL 141

Query: 129 VPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTASEAQQQYLAGA 188
           VPK LG++  +ELDGATVC+Q GTT ELN+ADFFR + ISF+PV I  ++E  + + +G 
Sbjct: 142 VPKKLGITKGSELDGATVCVQTGTTGELNIADFFRQHKISFKPVVIEESNEFLKAFASGR 201

Query: 189 CDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGDIVRWTLNALIA 248
           CDV T D+S LA  R    +  ++V+LPE ISKEPL P +R+GD+ W +IV WT+ ALI 
Sbjct: 202 CDVLTQDSSDLAIRRTLLPNAADYVLLPERISKEPLAPAIRYGDDRWLEIVNWTVYALIE 261

Query: 249 AEELGVTSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIKAGGNYGEIFET 308
           AEELG+T A + +   G+DNP I R LG + +L E  GL A +A N+IKA GNYGE+FE 
Sbjct: 262 AEELGITQATI-DSFLGSDNPSIRRFLGVDPSLAEATGLDAKFAYNIIKALGNYGEVFER 320

Query: 309 HIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
            +G+ + +G  RG N  WT+GGLLY+PPFR
Sbjct: 321 SVGKASKLGFERGYNQPWTQGGLLYSPPFR 350