Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 364 a.a., extracellular solute-binding protein, family 3 (NCBI) from Rhodospirillum rubrum S1H

 Score =  249 bits (636), Expect = 8e-71
 Identities = 132/323 (40%), Positives = 186/323 (57%), Gaps = 4/323 (1%)

Query: 18  TGAAADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGFDVAVCRAVAAAVFGDPTAVN 77
           + A  DTL +V+ RG + CG++  L G  S D +G W+GFD+  CRAVAAA  GD   V 
Sbjct: 42  SAAEGDTLRQVRERGYLTCGVNARLTGLGSVDPDGVWRGFDIDYCRAVAAAALGDSGRVR 101

Query: 78  FNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFTGINYYDGQGFMVPKAL-GVS 136
           F P+  + R   L SGE+D+L+RNTTWT  RD    + F G++ +DG G +  K L G  
Sbjct: 102 FVPLDIRSRLLALTSGEVDLLSRNTTWTLERDAGQGISFVGVSLFDGPGLLAWKDLPGDD 161

Query: 137 SATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTASEAQQQYLAGACDVYTTDA 196
            A+    A +C+Q   T    L     A  +SF  +P  +  EA+      ACD Y  D 
Sbjct: 162 LASLPPTARLCVQSAATAARVLPARMAAAGLSFTILPFRSLEEARMALFTRACDGYVADR 221

Query: 197 SGLAATRASFESP--DEHVVLPEIISKEPLGPLVRHGDNEWGDIVRWTLNALIAAEELGV 254
           + LA+  A+FE+P  D   +LP++++ EPLGP VR GD  W DI RWTL ALI AEE G+
Sbjct: 222 TALASL-ATFEAPRPDALRLLPDLLAVEPLGPAVRDGDANWFDIARWTLFALIKAEEEGL 280

Query: 255 TSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIKAGGNYGEIFETHIGENT 314
           +   +  +   T +PE+ R LG +  +G  LGL   W   ++   G YGE+F+ ++G+ +
Sbjct: 281 SHDRLPAVLESTQDPELRRFLGLDPGVGAPLGLDDAWVRRIVSQVGTYGEVFDRNLGQGS 340

Query: 315 PIGLARGLNAQWTEGGLLYAPPF 337
           P+ L RG NA   +GGL+ APPF
Sbjct: 341 PLKLERGPNALRRDGGLMVAPPF 363