Pairwise Alignments

Query, 338 a.a., cationic amino acid ABC transporter, periplasmic binding protein (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 341 a.a., amino acid ABC transporter substrate-binding protein from Pantoea sp. MT58

 Score =  347 bits (889), Expect = e-100
 Identities = 170/341 (49%), Positives = 228/341 (66%), Gaps = 3/341 (0%)

Query: 1   MKKSVLFGALAAA---GLAATGAAADTLEEVQARGAVNCGISTGLVGFASQDANGEWQGF 57
           MKK +L   +AAA   GLA    A  TL+ ++ +G V CGIS GL GF+  DA G++ G 
Sbjct: 1   MKKMMLSTLIAAASLVGLAQQAHAGTTLDAIKKKGFVQCGISDGLPGFSYADAGGKFTGI 60

Query: 58  DVAVCRAVAAAVFGDPTAVNFNPVTNQVRFEVLNSGEIDMLARNTTWTFSRDVDLKLEFT 117
           DV VCRA AAAVFGD T V + P+T + RF  L SGE+D+L+RNTTWT SRD  +   F 
Sbjct: 61  DVDVCRATAAAVFGDATKVKYTPLTAKERFTALQSGEVDVLSRNTTWTSSRDGGMGFLFA 120

Query: 118 GINYYDGQGFMVPKALGVSSATELDGATVCIQKGTTTELNLADFFRANNISFEPVPISTA 177
           G+NYYDG GF+  K  G+ SA ELDGATVCIQ GT TELN+AD+F+AN + + PV    +
Sbjct: 121 GVNYYDGIGFLTHKKAGLKSAKELDGATVCIQSGTDTELNVADYFKANKMQYTPVTFDRS 180

Query: 178 SEAQQQYLAGACDVYTTDASGLAATRASFESPDEHVVLPEIISKEPLGPLVRHGDNEWGD 237
            E+ +   +G CD   +D S L A R     PD+ +VLPE+ISKEPLGPLVR GD++W  
Sbjct: 181 DESAKALDSGRCDTLASDQSQLYALRIKLGKPDDFIVLPEVISKEPLGPLVRRGDDDWFT 240

Query: 238 IVRWTLNALIAAEELGVTSANVAELAAGTDNPEINRLLGTEGNLGEQLGLSADWAVNVIK 297
           IV+W+L A++ AEE+G+ S NV ++ A    P++   LG EG+ G+ L L   WA N++K
Sbjct: 241 IVKWSLYAMLNAEEMGINSKNVDQMTAKPTTPDMAHFLGAEGDFGKDLKLDNKWAYNIVK 300

Query: 298 AGGNYGEIFETHIGENTPIGLARGLNAQWTEGGLLYAPPFR 338
             GNY E F+ ++G+++ + +ARG NA W +GG+ YAPP R
Sbjct: 301 QVGNYQESFDRNVGKDSALKIARGQNALWNQGGIQYAPPVR 341