Pairwise Alignments

Query, 1150 a.a., chromosome segregation protein SMC (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 1195 a.a., condensin subunit Smc from Synechococcus elongatus PCC 7942

 Score =  225 bits (573), Expect = 2e-62
 Identities = 287/1221 (23%), Positives = 512/1221 (41%), Gaps = 119/1221 (9%)

Query: 5    RLRLNGFKSFVDPTDLIIGDGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGGMEDV 64
            ++ L+ FKSF   T L +    T V GPNG GKSN+L+AL + +G +    MR   + D+
Sbjct: 6    QIELSHFKSFGGTTSLPLLPEFTVVTGPNGSGKSNILDALLFALGLSSSKGMRADRLPDL 65

Query: 65   IFAGAASRPARNFAEVALILDNSDRRAPAGFNDTDQLE------------IIRRI----T 108
            + +  ASR       +  +    D   P    +T++ E            + R++    +
Sbjct: 66   VNSTYASRSRSTVETLVTVTFALDDWQPEA-EETEEGEGTGLQPGMAEWTVSRKLRVTPS 124

Query: 109  RDVGSAYKTNGKDVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKARRRILEEAA 168
                S Y  NG+    + +    +          +V QG ++ +I+  P+ RR+I++E A
Sbjct: 125  GTYTSTYAMNGEACTLQQLHEQLSRLRIYPEGYNVVLQGDVTNIISMSPRDRRQIIDELA 184

Query: 169  GISGLYQRRHEAELKLRGAETNLDRVDDVLEALAAQLATLARQAKQAARYREIGAQLRRA 228
            G++   ++  +A+ KL   +   DR   V + L  Q   LA+  ++A +Y+ +  +    
Sbjct: 185  GVAQFDRKIEQAKGKLEAVKEREDRCRIVEQELIEQRDRLAKDREKAQKYQALRQEQATK 244

Query: 229  EGLLLYRRWREADETRLVAVGELTARTTEAAAAETAARQAAKARVAADEA--------LP 280
            +      RWR A + ++ A+    A+    AA +   +Q  + ++   EA        + 
Sbjct: 245  QSWEAVLRWR-AGQRQVQALQRSLAQLATDAATDQQTQQTLEQQIQQTEATLDRLNQRVK 303

Query: 281  PLREEEAIA--GAVVQRLHVQRDT------LADQETRAREAIETLTGRIATLEADIAREE 332
             L EEE +    A+ Q+   QR +      L + +T+ ++ I+ L    A L+ +  ++ 
Sbjct: 304  ALGEEELLKLQAALAQQEAEQRQSQRQQQELVESQTQTQQQIQALLQTQAQLQTEGQQQA 363

Query: 333  ELNRDAGETIAKLDWEQAQIAKASVGHDEKLAAAAEAAQAASEVLTDRETTQSEMTEDVA 392
            E  R    TIA+    Q Q A   V   E    +A A  A S+    R+T+  +  + +A
Sbjct: 364  EQARTLQTTIAQTLQPQYQQALEQV---EAARQSAHALAAQSQDWVTRQTSLRQQADAIA 420

Query: 393  RLAARHQSTQRLLQEAGRAETRAQEQVGRAEAALSEAQAGLCDAETRFVAAERDQQAAQG 452
                  ++ Q  LQE    +T+ Q+Q+   ++AL    A L   ET    AE D+ AA  
Sbjct: 421  AQVEPQRAEQAQLQER---QTQLQQQLEATQSALVTVTAEL---ETETEQAEGDR-AALS 473

Query: 453  ETEAA-----------EAALAAAEAERSEVQGAEAEARAARSEAEGEATALRAEVG-ALE 500
            + EAA           E  L   +  R  +   + + +      E    A++   G A  
Sbjct: 474  QAEAAVVTAADQLVRLEEELQIQQETRDRLLKEQRDKQRQLDRQESLRQAMQETQGTAAA 533

Query: 501  KLVDRARAEG--GQVLDAVTAAPGYEAALGAALADDLKAPEVEGD---RSGWHLLPGYDA 555
            +L+      G  G V       P Y+ AL  A    L    V+ D    +G  LL    A
Sbjct: 534  RLILDTGLPGVHGLVAQLGRVEPRYQLALEVAAGGRLGYLVVDDDGVASAGIELLKQKKA 593

Query: 556  AQK--LPDGAAPLSAHVEVPAVLARRMAQVGLVDRAEGA--------------------- 592
             +   LP          E+P    R     GLVD A                        
Sbjct: 594  GRITFLPLNRIRAGKQPEIP----RWQQPEGLVDLAIALVDCDDRYREVFKFVLGGTVVF 649

Query: 593  -RLQPALK-PGQ-RLVSREGDLWRWDGLA-----ARAEDAPSAAAARLQQINRLAALKAD 644
             RL  A +  GQ R+V+ +G+L    G       AR     S  +    +   + A++  
Sbjct: 650  ERLDQARRYMGQYRIVTLDGELLETSGAMTGGSIARRSGGLSFGSPDSGESAEVRAIRDR 709

Query: 645  LEAAEAKAATARATHEGLQAAMRAATEADRAAREARKGAERALGEASRALSRAEADRNIM 704
            LE  E     +      LQAA++ A       R+ ++  +  + +  + L R +  +  +
Sbjct: 710  LEQLEVILDRSELQILNLQAAIKDAASTLSDRRQQQREQQLTVQQRQQTLQRLQQQQQQL 769

Query: 705  AGKLETLGSAVSRYRDEVLEARKAVA--EAQAAQADLGDLEAARAQVEAVRVTVD-AARM 761
              +L+      S+      +AR A    E  AA   L  L  A A++E   +  +   R 
Sbjct: 770  NAELQQRQQQASQ-----AQARLAALALELPAALKQLKTLRQALAELEDSPIHGEWQQRQ 824

Query: 762  TMLAKRSAHDELRREGEARTRRSQEITTQISGWRHRLETAEAHKGELEGRLEASRAELKS 821
            T+L ++ A   L ++ E   R++++   Q+   + RL+           +L   + E  +
Sbjct: 825  TLLQQQEA---LLQQQETALRQAEQQLQQLQTDQKRLQERAIAAQTQVSQLRQQQGEQLN 881

Query: 822  ATAAPEEIAAKRDALAHEIARAEARKAAAADALSTAEGAARSAEQAERDAERAASEAREA 881
              A  +E   ++   A  IA+ + R+A     L   +      ++ ER  +   S+ +  
Sbjct: 882  RLAQLDEQQRQQ---ATAIAQLQQRQAQLEAQLGQEKV---DRDRTERQLQEQRSQRQNL 935

Query: 882  RARAEARAEAAAETVTLAAERIQEALEVTPQQLLDTLKVGPDAMPAS--DAIEAEVNRLK 939
              + E R +   E      + ++  L+   Q+L   L   P+ +     +A++ E+  L 
Sbjct: 936  VWQQEKRQQQQQELQQQLTD-LEVQLQAEQQELPQPLPDIPEMVQQQGIEALQHELRSLA 994

Query: 940  RQREAMGAVNLRAEEDAKAVEEEYDGLVAEKGDLEGAIGKLRTGISSLNKEGRERLLTAF 999
            ++ +AM  VN+ A E+ +  +   + L  +   +E    +L   I +     R   + +F
Sbjct: 995  KRIQAMEPVNMLALEEYERTQARLEELSEKLTTIEAERTELLLRIENFTTLRRRAFMESF 1054

Query: 1000 EQVNDNFAMLFTHLFGGGEAKLVLVESDDPLEAGLEIMCQPPGKRLSTLSLLSGGEQTLT 1059
            E ++ NF  +F HL   G+  L L   +DP  +GL ++  P GK +  L+ +SGGE++LT
Sbjct: 1055 EAIDRNFQEIFAHL-SDGDGSLQLDNPEDPFSSGLNLIAHPKGKPVRRLASMSGGEKSLT 1113

Query: 1060 ALALIFAVFLANPAPICVLDEVDAPLDDANVTRFCDLLDEMTRRTETRFLIITHHAVTMA 1119
            AL+ IFA+    P+P   LDEVD+ LD ANV R   ++ +  +  +  F++++H    + 
Sbjct: 1114 ALSFIFALQRYRPSPFYALDEVDSFLDGANVERLARVIRQQAQAAQ--FIVVSHRRPMIE 1171

Query: 1120 RMDRLFGVTMGEQGVSQLVSV 1140
              +R  GVT      +Q++ +
Sbjct: 1172 AAERTIGVTQARGAHTQVLGI 1192