Pairwise Alignments

Query, 379 a.a., succinyl-diaminopimelate desuccinylase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 377 a.a., succinyl-diaminopimelate desuccinylase from Vibrio cholerae E7946 ATCC 55056

 Score =  229 bits (585), Expect = 7e-65
 Identities = 145/382 (37%), Positives = 206/382 (53%), Gaps = 18/382 (4%)

Query: 1   MTDP--VALTADLIRCPSVTPEEGGALSLLEARLSAAGFACTRVDRNGIANLFARWGEKG 58
           MTD   +AL  +LI   SVTP + G   L+  RL A GF    +      N +AR G + 
Sbjct: 1   MTDSPVLALAKELISRQSVTPADAGCQDLMIERLKALGFEIESMVFEDTTNFWARRGTQS 60

Query: 59  HARSFGFNGHTDVVPVGARADWRFDPFGAQVEGDWMYGRGAVDMKSAVAAFAAAAMDFVA 118
               F F GHTDVVP G  + W   PF   V   +++GRGA DMK ++A    A   F+A
Sbjct: 61  PL--FVFAGHTDVVPAGPLSQWHTPPFEPTVIDGFLHGRGAADMKGSLACMIVAVERFIA 118

Query: 119 DTPP-DGAVILAITGDEEGDAKDGTVALLDWMAAQGEAMDVCLVGEPTCPDEMGEMMKIG 177
           + P   G++   IT DEEG   +GTV +++ + A+ E +D+C+VGEP+    +G+++K G
Sbjct: 119 EHPDHQGSIGFLITSDEEGPFINGTVRVVETLMARNELIDMCIVGEPSSTLAVGDVVKNG 178

Query: 178 RRGSMTFFFEALGVQGHSAYPHRAKNP----LPALAKLVDRLAGLELDTGTDHFDPSTLA 233
           RRGS+T   +  G QGH AYPH A NP    LPALA+    LA  + D G  +F P++  
Sbjct: 179 RRGSITGDLKVKGTQGHVAYPHLANNPVHKALPALAE----LAATQWDEGNAYFPPTSFQ 234

Query: 234 VTTFDTGNPANNVIPAACRATVNIRFNDAHSSESLTAMVRGIAAEVAAETGIEITDRVSV 293
           +     G  A+NVIP       N RF+   + E +   V      V    G++   + ++
Sbjct: 235 IPNLQAGTGASNVIPGEFDVQFNFRFSTELTDEEIKRRVH----SVLDAHGLDYDVKWTL 290

Query: 294 SGESFITPPGRLSDLVAAAVETETGRVPVLSTSGGTSDARFV-QHHCPVVEFGLVGKSMH 352
           SG+ F+T  G L   V AAVE    + P L T+GGTSD RF+ Q    VVE G V  ++H
Sbjct: 291 SGQPFLTDTGELLAAVVAAVEEVNHQAPALLTTGGTSDGRFIAQMGAQVVELGPVNATIH 350

Query: 353 QVDERVAIAQIPQLKAIYTRIL 374
           +V+E V IA + +L  +Y + L
Sbjct: 351 KVNECVRIADLEKLTDMYQKTL 372