Pairwise Alignments

Query, 379 a.a., succinyl-diaminopimelate desuccinylase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 397 a.a., succinyl-diaminopimelate desuccinylase from Sinorhizobium meliloti 1021

 Score =  340 bits (871), Expect = 5e-98
 Identities = 195/391 (49%), Positives = 238/391 (60%), Gaps = 16/391 (4%)

Query: 2   TDPVALTADLIRCPSVTPEEGGALSLLEARLSAAGFACTRVDRN-----GIANLFARWGE 56
           TDPV+  A LIRCPSVTP EGGAL+ LEA L+  GF   RV         I NL+AR G 
Sbjct: 4   TDPVSNLAALIRCPSVTPAEGGALAALEAMLAPVGFKVDRVVAKEPGTPDIENLYARTGG 63

Query: 57  KGHARSFGFNGHTDVVPVGARADWRFDPFGAQVEGDWMYGRGAVDMKSAVAAFAAA-AMD 115
           +G    F   GHTDVVPVG  A W   PF A +    MYGRGAVDMK  +A F AA A  
Sbjct: 64  EGPHLMFA--GHTDVVPVGDEAAWSRPPFSAAIAEGEMYGRGAVDMKGGIACFVAAVARH 121

Query: 116 FVADTPPDGAVILAITGDEEGDAKDGTVALLDWMAAQGEAMDVCLVGEPTCPDEMGEMMK 175
                 P G++   ITGDEEG A +GTV LL+W AA+GE  D CLVGEPT PD +G+M+K
Sbjct: 122 IEKHGAPKGSISFLITGDEEGPAINGTVKLLEWAAARGERWDACLVGEPTNPDCIGDMIK 181

Query: 176 IGRRGSMTFFFEALGVQGHSAYPHRAKNPLPALAKLVDRLAGLELDTGTDHFDPSTLAVT 235
           IGRRGS++      GVQGH+AYPH A NP+ ++ ++   L     D GT++F PS L VT
Sbjct: 182 IGRRGSLSGRITVHGVQGHAAYPHLADNPVRSILQIAQALMDPPFDDGTENFQPSNLEVT 241

Query: 236 TFDTGNPANNVIPAACRATVNIRFNDAHSSESLTAMVRGIAAEVAAETGI---EITDRVS 292
           T D GN A NVIPA   A  NIRFND  ++ESL A +       AA + +       R  
Sbjct: 242 TIDVGNTAVNVIPAKASAAFNIRFNDRWTAESLMAEIVARLDRAAAGSALRPGRAPARYE 301

Query: 293 V-----SGESFITPPGRLSDLVAAAVETETGRVPVLSTSGGTSDARFVQHHCPVVEFGLV 347
           +         F+T    L D ++ AVE  TGR P LST+GGTSDARF++ +CPVVEFGLV
Sbjct: 302 IVWNERPSHVFLTRNNALIDSLSGAVEAVTGRQPQLSTTGGTSDARFIKDYCPVVEFGLV 361

Query: 348 GKSMHQVDERVAIAQIPQLKAIYTRILRDYF 378
           GK+MH VDERVA+A +  L  IY   +  +F
Sbjct: 362 GKTMHMVDERVALADLETLTGIYETFIARWF 392