Pairwise Alignments

Query, 379 a.a., succinyl-diaminopimelate desuccinylase (RefSeq) from Dinoroseobacter shibae DFL-12

Subject, 376 a.a., succinyl-diaminopimelate desuccinylase (RefSeq) from Shewanella loihica PV-4

 Score =  224 bits (571), Expect = 3e-63
 Identities = 141/375 (37%), Positives = 199/375 (53%), Gaps = 10/375 (2%)

Query: 3   DPVALTADLIRCPSVTPEEGGALSLLEARLSAAGFACTRVDRNGIANLFARWGEKGHARS 62
           D + L  DLI   SVTP + G   L+  RL+A GF    +      N++AR G++G    
Sbjct: 4   DVLTLAQDLIARASVTPLDEGCQPLMAKRLAAKGFNIEPMVFEDTTNMWARRGDQGPL-- 61

Query: 63  FGFNGHTDVVPVGARADWRFDPFGAQVEGDWMYGRGAVDMKSAVAAFAAAAMDFVADTPP 122
           F F GHTDVVPVG    W   PF   V   +++GRGA DMK ++AA   A   FV D  P
Sbjct: 62  FCFAGHTDVVPVGDLNRWHTPPFEPVVIDGYLHGRGAADMKGSLAAMVVATERFV-DKHP 120

Query: 123 D--GAVILAITGDEEGDAKDGTVALLDWMAAQGEAMDVCLVGEPTCPDEMGEMMKIGRRG 180
           D  G++   IT DEEG   +GT  ++D + A+ E +   LVGEP+   ++G+++K GRRG
Sbjct: 121 DHKGSIAFLITSDEEGPFINGTTRVIDTLEARNEKITWSLVGEPSSTHKLGDIVKNGRRG 180

Query: 181 SMTFFFEALGVQGHSAYPHRAKNPLPALAKLVDRLAGLELDTGTDHFDPSTLAVTTFDTG 240
           S+T      GVQGH AYPH A NP+   A  +D LA ++ D G + F P++  +   + G
Sbjct: 181 SLTGNLTVKGVQGHVAYPHLADNPIHKAAPALDELARMKWDNGNEFFPPTSFQIANINGG 240

Query: 241 NPANNVIPAACRATVNIRFNDAHSSESLTAMVRGIAAEVAAETGIEITDRVSVSGESFIT 300
             A+NVIP +     N R++   ++E L   V      +    G++       +G  F+T
Sbjct: 241 TGASNVIPGSLEVMFNFRYSTEVTAEILIQRV----LNILDAHGLDYDISWIFNGLPFLT 296

Query: 301 PPGRLSDLVAAAVETETGRVPVLSTSGGTSDARFV-QHHCPVVEFGLVGKSMHQVDERVA 359
             G L D    A+   TG      TSGGTSD RF+      V+E G V  ++H+V+E V 
Sbjct: 297 DAGPLLDATREAIYEITGTETDPQTSGGTSDGRFIAPTGAQVIELGPVNATIHKVNECVK 356

Query: 360 IAQIPQLKAIYTRIL 374
           +  I QL  +Y RIL
Sbjct: 357 VEDIEQLAKVYERIL 371