Pairwise Alignments

Query, 638 a.a., capsular biosynthesis protein from Cupriavidus basilensis FW507-4G11

Subject, 646 a.a., polysaccharide biosynthesis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  616 bits (1589), Expect = 0.0
 Identities = 341/619 (55%), Positives = 435/619 (70%), Gaps = 7/619 (1%)

Query: 8   MSRQKKILLMLVLDFFLLPLSLWSAVGLRTDHWAV--SSQYPISLYFVTSLVAIPVFVKL 65
           + R +K L+ + +D   L  + W A+ +R D   V   SQY   L  +T  ++I  F++L
Sbjct: 10  LKRSQKRLVSVAIDSVFLLFAFWFALLVRLDSVDVLFKSQY-WGLIVLTIPMSIAGFIRL 68

Query: 66  GLYRSVVRYMEDRAILTIVVAVTISIGMFGSLIFFLGLSNVPRGALLIYWLLAIVYIVCS 125
           GLYR+V+RY+  +A   IV  V IS      L ++ G+ ++PR    IY   A+V++  +
Sbjct: 69  GLYRAVLRYIGSQAFTAIVAGVGISTIALVLLAYYGGV-DLPRTVPFIYAAFALVFVGGA 127

Query: 126 RFFVRAAFRMLPSFGRHGQKVIIYGAGDAGRQLAVALGVGSDYEPMAFVDDDIKKRGLSI 185
           R  +R+         R G+ VIIYGAG +GRQ A+AL    +Y P+AFVDDD      SI
Sbjct: 128 RALMRSLVGA--GINRRGEPVIIYGAGVSGRQTAIALAQSHEYHPVAFVDDDESLHNTSI 185

Query: 186 AGIKVHGADELPELVRRFAIHQVLIAIPSASRSRRIEIVNALEPLAVEVRAVPGMAEMVS 245
            G+ V+ +++L +L+++    +VL+A+PSASRSRR EI+N LEPL V+V  +P MA++VS
Sbjct: 186 QGLHVYASNQLSKLIKQRPTTRVLLAMPSASRSRRQEIINQLEPLTVKVMTLPAMADLVS 245

Query: 246 GEVRLDDVREVEIDELLGRDVVAPNMKLLMENIAGKSVMVTGAGGSIGSELCRQIIKNKP 305
           G+    DV+EVEI++LLGRD VAP   LL  NI  K VMVTGAGGSIGSELCRQI+K  P
Sbjct: 246 GDKLFSDVKEVEIEDLLGRDSVAPRQHLLTANIKNKVVMVTGAGGSIGSELCRQILKQLP 305

Query: 306 ARLVLYEQSEFALYALEYELQQTVTEKELPIELVPVLGSVQNGERVFGIMSRYGVQTIYH 365
            +LVL+E SEFALY++E EL  T TE  + +E+VP++GSVQ   RV  +M  + VQT+YH
Sbjct: 306 KQLVLFELSEFALYSIERELSATATELGIDVEIVPIMGSVQRENRVQAVMQAFKVQTVYH 365

Query: 366 AAAYKHVPIVEFNMTEGILNNTVGTRITAEAAIRANVEAFVLISTDKAVRPTNVMGASKR 425
           AAAYKHVP+VE N+ EG+ NN  GT  TA AAI A VE FVL+STDKAVRPTNVMG +KR
Sbjct: 366 AAAYKHVPLVEHNVVEGVRNNVFGTLYTARAAIAAKVETFVLVSTDKAVRPTNVMGTTKR 425

Query: 426 MAELCLQAFAQDPNVRTRFSIVRFGNVLGSSGSVVPLFRTQIAAGGPVTVTHPDIIRYFM 485
           MAEL LQA A++ N  TRF +VRFGNVLGSSGSVVPLFR QIA GGPVTVTHP+I R+FM
Sbjct: 426 MAELALQALAKE-NHHTRFCMVRFGNVLGSSGSVVPLFRKQIANGGPVTVTHPEITRFFM 484

Query: 486 TIPEAAQLVIQAGAMGGEGEVFVLDMGQPVKIVDLARRMIHLSGFQVKDEVNPDGDIEIQ 545
           TIPEA+QLVIQAGAMG  G+VFVLDMG+ VKI+DLA +MI LSG+ VKDE NP+GDI I+
Sbjct: 485 TIPEASQLVIQAGAMGKGGDVFVLDMGKSVKIIDLAAKMIRLSGYDVKDEANPNGDIAIE 544

Query: 546 FTGLRPGEKLYEELLIGDAVSGTGHPRIMKADESFLSREQLDEKMKCLIQASDSNDCETI 605
           FTGLRPGEKLYEELLIGD V+GT H RIM A+E +L   +L+  +  L +A    + E I
Sbjct: 545 FTGLRPGEKLYEELLIGDDVTGTDHERIMTANEIYLPWVELELILNRLDKACHEFNHEAI 604

Query: 606 RTILLECVSGFRPDRDIKD 624
           R ILL   +GF P   I D
Sbjct: 605 REILLAAPTGFAPTDGICD 623