Pairwise Alignments

Query, 333 a.a., pseudouridine synthase from Cupriavidus basilensis FW507-4G11

Subject, 329 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  290 bits (741), Expect = 4e-83
 Identities = 156/311 (50%), Positives = 205/311 (65%), Gaps = 9/311 (2%)

Query: 20  QVAYVTIGDEADGQRIDNFLLKLSKGVPKSHVYRILRSGEVRVNKGRVDATYRLQLGDVV 79
           +V  VTI ++  GQRIDNFL+   KGVPKS +YRI+R GEVRVNK R+   Y+LQ GD+V
Sbjct: 19  KVELVTIDEDNLGQRIDNFLVTKLKGVPKSMIYRIVRKGEVRVNKKRIKPEYKLQDGDIV 78

Query: 80  RIPPMRVAASAPDAGKF-----VPPASFPVVFEDEYLLVINKPAGVAVHGGSGVAFGVIE 134
           RIPP+RV+AS    G       V      ++FED+ ++V+NKPAG+AVHGGSGV FGVIE
Sbjct: 79  RIPPVRVSASEDKPGPSAKLTKVSQLEGRILFEDKAIIVLNKPAGIAVHGGSGVDFGVIE 138

Query: 135 QLRRARPQARFLELVHRLDRETSGLLVLAKKRTALVNLHEQMRGSALDKRYFACVAGHFE 194
            +R  RPQ +FLELVHRLD+ETSG+L++AKKR AL +LH+Q+R   + K Y A V G ++
Sbjct: 139 AMRSLRPQQKFLELVHRLDKETSGVLLIAKKRRALKHLHDQLRYKKMQKDYMALVRGEWQ 198

Query: 195 NARQHVKFPLYKYTTPEGERRVRVQEDGIASHTVFNRLEVMPGYTLLEAELKTGRTHQIR 254
           N  + +  PL K T   GER VRV ++G  S T F  ++   G TL++A   TGRTHQIR
Sbjct: 199 NHDKVINAPLLKLTLKSGERIVRVNQEGKPSETRFKIMQRYQGATLVQASPVTGRTHQIR 258

Query: 255 VHLAHSGFPILGDEKYGDYALNKALARSGANPGLKRMFLHAHSLTFTHPISGEITTVVAP 314
           VH  ++G PI  DEKY +   + A+   G N    R+FLHA  L FTHP+S E+  V AP
Sbjct: 259 VHCQYAGHPIACDEKYSEQKFDDAMRELGLN----RLFLHAAQLKFTHPVSEEVMQVKAP 314

Query: 315 MPPECEAFLQQ 325
           +    +  L +
Sbjct: 315 LDKALQDLLNK 325