Pairwise Alignments

Query, 333 a.a., pseudouridine synthase from Cupriavidus basilensis FW507-4G11

Subject, 329 a.a., ribosomal large subunit pseudouridine synthase C (RefSeq) from Shewanella sp. ANA-3

 Score =  278 bits (712), Expect = 1e-79
 Identities = 152/313 (48%), Positives = 204/313 (65%), Gaps = 9/313 (2%)

Query: 20  QVAYVTIGDEADGQRIDNFLLKLSKGVPKSHVYRILRSGEVRVNKGRVDATYRLQLGDVV 79
           QV  +TI ++   QRIDNFL+ + KGVPKS +YRI+R GEVRVNK R+   Y+LQ+GDVV
Sbjct: 19  QVQLITIDEDHLDQRIDNFLITVLKGVPKSMIYRIVRKGEVRVNKKRIKPEYKLQIGDVV 78

Query: 80  RIPPMRVAA----SAPDAG-KFVPPASFPVVFEDEYLLVINKPAGVAVHGGSGVAFGVIE 134
           R+PP+R+A     +AP A    V      ++ ED +L+V+NKPAG+AVHGGSGV +GVIE
Sbjct: 79  RVPPVRMAEQDNRTAPSANLSRVSQLEDRILHEDNHLIVLNKPAGIAVHGGSGVDYGVIE 138

Query: 135 QLRRARPQARFLELVHRLDRETSGLLVLAKKRTALVNLHEQMRGSALDKRYFACVAGHFE 194
            LR  RPQ +FLELVHRLD++TSG+L++AKKR+AL ++H+Q+R   + K Y A V G + 
Sbjct: 139 ALRSLRPQQKFLELVHRLDKDTSGVLLVAKKRSALKHMHDQLRYKKMQKDYLALVKGEWS 198

Query: 195 NARQHVKFPLYKYTTPEGERRVRVQEDGIASHTVFNRLEVMPGYTLLEAELKTGRTHQIR 254
              + VK PL K T   GER VRV  +G  S T F  ++   G TL++A   TGRTHQIR
Sbjct: 199 AQDKVVKQPLLKLTLKSGERIVRVNAEGKPSETRFKIVQRYQGCTLVQASPVTGRTHQIR 258

Query: 255 VHLAHSGFPILGDEKYGDYALNKALARSGANPGLKRMFLHAHSLTFTHPISGEITTVVAP 314
           VH  + G PI  DEKY + A + ++       GL R+FLHA  L F HP + E+  V AP
Sbjct: 259 VHCQYMGHPIACDEKYSEQAFDDSMRAL----GLTRLFLHAAELMFIHPENDEVMRVSAP 314

Query: 315 MPPECEAFLQQAR 327
           +    +  L + +
Sbjct: 315 LDDNLQQLLSKLK 327