Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

 Score = 1139 bits (2947), Expect = 0.0
 Identities = 592/1145 (51%), Positives = 783/1145 (68%), Gaps = 15/1145 (1%)

Query: 14   PLVKAGQRYTVSGLPGSADALALAAYASQHRERVPMLAVVCANAVDAQRLAEEIPWFAPS 73
            PL  A  +     LPG+A +LA+A  AS  +    +L    A++  A+RL EE+ +FAP 
Sbjct: 8    PLPAASGKQHWGNLPGAALSLAIAEAASNAKRFTLLLT---ADSQSAERLQEELAFFAPG 64

Query: 74   LRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQGGQCDIMLVPAQTALYRLAPPAFLA 133
            L V   PDWETLPYD FSPHQD+VS+R++ L+ +      +++VP  TAL+RLAP  FL 
Sbjct: 65   LPVLHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLAPKRFLL 124

Query: 134  AYTFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPLPYRIDL 193
              +     G+KLD   ++ +   AGY  V  V   GE++VRG LIDLFPMGSPLPYRIDL
Sbjct: 125  GSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPYRIDL 184

Query: 194  FGNEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRWRELFEGDPSKSTI 253
            F +EIET+R FDP+ QRS+  V+ +RLLP REFPL   A T FR R+RE F+ D  +  I
Sbjct: 185  FDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRRCPI 244

Query: 254  YKDIGNGVPSAGIEYYLPLFFESSATVFDYLPANSQLAFAGDVPDAIRRFWADTTQRYNF 313
            Y+D+  G+  AGIEYYLPLF+E +AT+FDYLP +SQ+     +  A  +FW+D   RY  
Sbjct: 245  YQDLSTGITPAGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWSDVRNRYEE 304

Query: 314  MRHDRERPLLPPAALFLSEEQFFTGAKPLARLVLQG----TATGDTVPLAESLPDVSVNR 369
             R D ERPLLPPA LF+  E  F   K   R+V       +  G     A++LP++++  
Sbjct: 305  RRVDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVESGIGRERFNAQALPELAIES 364

Query: 370  RAEDPLVNLEALLLKKDRRVLMCADSAGRRETLLQLFGESGLRPQPIDDYAAFLAGDSHF 429
            +A +PL  L   L     RVL  A+SAGRRE LL+L     LRPQ +D +  FLA D   
Sbjct: 365  KASEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWTDFLASDQRL 424

Query: 430  SIVVAPLQSGFAVPSAQGIEPLAFVTEAELYAGTARRTGRRKQEQASAVDSMVRDLAELK 489
            +I +APL  G        ++ +A V E+ L+ G      RR+++     ++++++L EL+
Sbjct: 425  AITIAPLDEGLQ------LDDVALVAESPLF-GQRVMQRRRREKSRDGGENVIKNLTELR 477

Query: 490  IGDPVVHSEHGIGRYQGLVSLDLGQGEEEFLHLDYEKGSKLYVPVHQLHVISRYSGADPD 549
             G PVVH +HG+GRYQGL +L++    +EFL L Y + +KLYVPV  LH+I+RY+G+D  
Sbjct: 478  EGSPVVHIDHGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLHLIARYTGSDDA 537

Query: 550  TAPLHSLGSGQWDRAKRRAAQQIRDTAAELLNLYARRALRQGHAFELTPKDYEKFAESFG 609
             APLH LGS  W +AKR+AA+Q+RD AAELL++YARRA R+G+AF+    DYE FA  F 
Sbjct: 538  LAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFP 597

Query: 610  FEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPT 669
            FEETPDQ AAI AV  D+ S KPMDRLVCGDVGFGKTEVA+RAAF+AV GG+QV +L PT
Sbjct: 598  FEETPDQQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPT 657

Query: 670  TLLAEQHFQNLSDRFAEWPVRIVELSRFKTKKEIDGAIKQINDGTADIVIGTHKMLSDDV 729
            TLLA+QH+ +  DRFA+WPVR+  +SRFK+ KE+  AI ++ +G  DI+IGTHK+L DDV
Sbjct: 658  TLLAQQHYNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDV 717

Query: 730  KFQRLGLVVIDEEHRFGVRQKEMLKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT 789
            KF  LGLV+IDEEHRFGVRQKE LK LR+EVD+LTLTATPIPRTL M++ G+RD S+IAT
Sbjct: 718  KFSNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIAT 777

Query: 790  APQKRLAIKTFVRREEDGVVREAILRELKRGGQVYFLHNEVDTIENKRAKLAELVPEARI 849
             P +RL+++TFV  +++ V++EA+LREL RGGQVY+LHN+V TIE   A L  LVPEAR+
Sbjct: 778  PPARRLSVRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARV 837

Query: 850  AVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQ 909
            A+ HGQM ER+LE+VM DF  +R N+L+ +TIIETGIDVP+ANTI+I RADKFGLAQLHQ
Sbjct: 838  AIGHGQMRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQ 897

Query: 910  LRGRVGRSHHQAYAYMLVHDVEGLSKLAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 969
            LRGRVGRSHHQAYAY+L    + ++  AQ+RLEAI   ++LG+GF LA HDLEIRGAGE+
Sbjct: 898  LRGRVGRSHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGEL 957

Query: 970  LGDKQSGEIHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLAVTTEINLGTPALLPSDYCT 1029
            LG+ QSG+I  +GF LY +ML  AVK+++ G++P+L  PL    EINL  PAL+P DY  
Sbjct: 958  LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLP 1017

Query: 1030 DVHERLSLYKRLANCEAAERVDDIQEELIDRFGRLPPQAQALIETHRLRIAAVPLGVRKI 1089
            DVH RL LYKR+AN    + + ++Q E+IDRFG LP   + L+    L++ A  LG+ KI
Sbjct: 1018 DVHARLILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKI 1077

Query: 1090 DASDAAISMQFLPNPPIDAMKIIDLVQKN-RHIKLAGQDKLRIEAKMPDVAVRAQTIKHT 1148
            DA      ++F  +  +D M +I L+Q   +  K  G    + +  M     R  T++  
Sbjct: 1078 DAGPQGGRIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLEAL 1137

Query: 1149 LRQLA 1153
            L +LA
Sbjct: 1138 LERLA 1142