Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score = 1050 bits (2715), Expect = 0.0
 Identities = 553/1139 (48%), Positives = 759/1139 (66%), Gaps = 14/1139 (1%)

Query: 18   AGQRYTVSGLPGSADALALAAYASQHRERVPMLAVVCANAVDAQRLAEEIPWFAPSLRVR 77
            AG +  +  L G++ ALA+A  A+ H     +LAV   +   A +L  E+  F+ S  V 
Sbjct: 15   AGDKKAIGNLHGASLALAIAELANAHTSHT-LLAV--PDPQTALKLLHEVEQFSHS-EVA 70

Query: 78   LLPDWETLPYDSFSPHQDLVSERLATLHDIQGGQCDIMLVPAQTALYRLAPPAFLAAYTF 137
            L PDWETLPYD+FSPHQD++S+R++ L+ +      I +VP  T L R +P  FL  +T 
Sbjct: 71   LFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130

Query: 138  FFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPLPYRIDLFGNE 197
              K+G+      L+ Q   + Y HV  V  PGEY+ RG ++DLFPMGS  P+RID F +E
Sbjct: 131  IVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDE 190

Query: 198  IETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRWRELFEGDPSKSTIYKDI 257
            I+TIR FDPD QRS+  + E+RLLP  EFP   AA   FR RWR+ FE      ++Y  +
Sbjct: 191  IDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQV 250

Query: 258  GNGVPSAGIEYYLPLFFESSATVFDYLPANSQLAFAGDVPDAIRRFWADTTQRYNFMRHD 317
              G   AGIEY+ PLFFE S T+FDYLPANSQL   G++  AI +F  D   RY+    D
Sbjct: 251  SKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNID 310

Query: 318  RERPLLPPAALFLSEEQFFTGAKPLARLVLQGTA----TGDTVPLAESLPDVSVNRRAED 373
              RPLLPP  L+L +++ F   K L ++ L  +      G      + LP ++V  + ++
Sbjct: 311  PLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKE 370

Query: 374  PLVNLEALLLKKDRRVLMCADSAGRRETLLQLFGESGLRPQPIDDYAAFLAGDSHFSIVV 433
            PL  L     +   +++   +S GRRE LL+L     LRPQ  +D++        +S+V+
Sbjct: 371  PLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVL 430

Query: 434  APLQSGFAVPSAQGIEPLAFVTEAELYAGTARRTGRRK-QEQASAVDSMVRDLAELKIGD 492
               + GF      G   +A + E++L      +  R+K ++  +  D+++R+LAELK G 
Sbjct: 431  GSAERGFIY----GDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQ 486

Query: 493  PVVHSEHGIGRYQGLVSLDLGQGEEEFLHLDYEKGSKLYVPVHQLHVISRYSGADPDTAP 552
            PVVH +HGIGRY GL +L+ G    E++ L+Y+  +KLYVPV  L++ISRYSG   + A 
Sbjct: 487  PVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQ 546

Query: 553  LHSLGSGQWDRAKRRAAQQIRDTAAELLNLYARRALRQGHAFELTPKDYEKFAESFGFEE 612
            LH LG   W +A+R+AA+++RD AAELL++YA+R ++ G  F L  + Y  F  +F FEE
Sbjct: 547  LHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEE 606

Query: 613  TPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLL 672
            T DQA AI AV++DM   K MDRLVCGDVGFGKTEVA+RAAFVA   GKQVA+L PTTLL
Sbjct: 607  TDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLL 666

Query: 673  AEQHFQNLSDRFAEWPVRIVELSRFKTKKEIDGAIKQINDGTADIVIGTHKMLSDDVKFQ 732
            A+QHF+N  DRFA  P+R+  LSRFK+ KE    ++ + DG  DI++GTHK+LS +++F 
Sbjct: 667  AQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFA 726

Query: 733  RLGLVVIDEEHRFGVRQKEMLKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQ 792
             LGL+++DEEHRFGVRQKE +K +RA+VD+LTLTATPIPRTL MA+ G+RD S+IAT P 
Sbjct: 727  DLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 786

Query: 793  KRLAIKTFVRREEDGVVREAILRELKRGGQVYFLHNEVDTIENKRAKLAELVPEARIAVA 852
            +RLAIKTFVR+ ED V+REA+LRE+ RGGQVYFLHN+V+TI+   A L +LVPEARI VA
Sbjct: 787  RRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVA 846

Query: 853  HGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRG 912
            HGQM ERELE+VM DF  +R N+L+CTTIIETGIDVPTANTI++ RAD  GLAQLHQLRG
Sbjct: 847  HGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRG 906

Query: 913  RVGRSHHQAYAYMLVHDVEGLSKLAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGD 972
            RVGRSHHQAYAY+L    + ++K A +RLEAI  +E+LG+GF LA HDLEIRGAGE+LG+
Sbjct: 907  RVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGE 966

Query: 973  KQSGEIHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLAVTTEINLGTPALLPSDYCTDVH 1032
            +QSG+I  +GF LY +ML  AV++LK+GKEP L   L   TE+ +  PALLP +Y  D++
Sbjct: 967  EQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDIN 1026

Query: 1033 ERLSLYKRLANCEAAERVDDIQEELIDRFGRLPPQAQALIETHRLRIAAVPLGVRKIDAS 1092
             RLS+YK++A+  + + + +++ ELIDRFG+LP  A  L+    L++ A+ L VRKI+A 
Sbjct: 1027 TRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAH 1086

Query: 1093 DAAISMQFLPNPPIDAMKIIDLVQKN-RHIKLAGQDKLRIEAKMPDVAVRAQTIKHTLR 1150
            +    ++F PN  I+ + ++ L+Q   + + + G  KL+    + + + R Q +   L+
Sbjct: 1087 ERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLK 1145