Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score =  668 bits (1724), Expect = 0.0
 Identities = 422/1134 (37%), Positives = 627/1134 (55%), Gaps = 70/1134 (6%)

Query: 15   LVKAGQRYTVSGLPGSADALALAAYASQHRERVPMLAVVCANAVDAQRLAEEIPWFAPSL 74
            ++ A +  T+  +P  A+AL LA  A   R   P+ A + ++      L + + + AP +
Sbjct: 12   ILAATREITIGPVPTGAEALVLAELA---RAGAPV-AYILSDGQKVADLEQVLGFVAPDI 67

Query: 75   RVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQGGQCD----IMLVPAQTALYRLAPPA 130
             V  LP W+ LPYD  SP  D  + RLA L  +   +      I+LV    AL R++P  
Sbjct: 68   PVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTINAALQRISPQD 127

Query: 131  FLAAYTFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPLPYR 190
             + +  F  + G ++    L A+    G+E V  V   GE++VRGG++D++  GS  P R
Sbjct: 128  VIESLAFTARPGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGSGEPLR 187

Query: 191  IDLFGNEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRWRELFEGDPSK 250
            +D FG+ +E IR+FDP +QR++  V+ + L P  E  L     + FR ++  LF      
Sbjct: 188  LDFFGDTLEAIRSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFGAATRD 247

Query: 251  STIYKDIGNGVPSAGIEYYLPLFFESSATVFDYLP-------------ANSQLAFAGDVP 297
              +Y+ +  G   AG+E++LPLF++   TVFDYL              A  +     D  
Sbjct: 248  DALYQAVSEGRRYAGMEHWLPLFYDRLETVFDYLDGFRIVTDHLAREAAAERSKLVLDYY 307

Query: 298  DAIRRFWADTTQRYNFMRHDRERPLLPPAALFLSEEQF--------------FTGAKPLA 343
            DA  R  + +  +    +    +P+ PP  L+L+ + F              FT  +  A
Sbjct: 308  DA--RLASASPGKSQVTQGTPYKPV-PPDMLYLTAKGFGEALNDLNAVRLSPFTEHEGEA 364

Query: 344  RLVLQGTATGD---TVPLAESLPDVSVNRRAEDPLVNLEALLLKKDRRVLMCADSAGRRE 400
            R V+   A        P  E+  D        D  V   A    K  +V++   + G  +
Sbjct: 365  RQVVNIEARQGLRWAKPAGEADND-GTRTNVFDQAVKHIAEKRAKGAKVIVSGWTEGSLD 423

Query: 401  TLLQLFGESGL---RP-QPIDDYAAFLAGDSHFSIVVAPLQSGFAVPSAQGIEPLAFVTE 456
             LLQ+  E GL   RP + + D  +   G++  +  V  L++GF          L  + E
Sbjct: 424  RLLQVLAEHGLANIRPVKALSDIGSLKPGEA--ASAVLSLEAGFETGD------LVVIGE 475

Query: 457  AELYAGTARRTGRRKQEQASAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVSLDLGQGE 516
             ++      R  +R++  A      + ++  L  G  VVH+EHGIGR+ GL +++     
Sbjct: 476  QDILGDRLVRRSKRRKRGAD----FIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAP 531

Query: 517  EEFLHLDYEKGSKLYVPVHQLHVISRYSGADPDTAPLHSLGSGQWDRAKRRAAQQIRDTA 576
             + L L Y   +KL++PV  + ++SRY G++   A L  LG   W   K +  +++ D A
Sbjct: 532  HDCLELVYADDAKLFLPVENIELLSRY-GSEGTDAVLDKLGGVAWQARKAKLKKRLLDMA 590

Query: 577  AELLNLYARRALRQGHAFELTPKD--YEKFAESFGFEETPDQAAAIAAVIADMTSGKPMD 634
              L+ + A R  R  HA  L  +D  Y++FA  F ++ET DQ  +I AV  D+  G+PMD
Sbjct: 591  GGLIRIAAERHTR--HAPVLAAQDGVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRPMD 648

Query: 635  RLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHFQNLSDRFAEWPVRIVEL 694
            RLVCGDVGFGKTEVALRAAF+A M G QVA++ PTTLLA QHF+  SDRF   P+RI + 
Sbjct: 649  RLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQA 708

Query: 695  SRFKTKKEIDGAIKQINDGTADIVIGTHKMLSDDVKFQRLGLVVIDEEHRFGVRQKEMLK 754
            SR    K++    K++ +G  DIV+GTH +L   +KF  LGL++IDEE  FGV+ KE LK
Sbjct: 709  SRLVGSKDLALTKKEVAEGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLK 768

Query: 755  TLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVVREAIL 814
             L+ +V VLTL+ATPIPRTL +AL G+R+ S+I T P  R+A++TF+   +  V+RE ++
Sbjct: 769  ELKTDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLM 828

Query: 815  RELKRGGQVYFLHNEVDTIENKRAKLAELVPEARIAVAHGQMHERELERVMRDFVARRDN 874
            RE  RGGQ +++   V  +      L   VPE ++AVAHGQM   ELE +M  F   R +
Sbjct: 829  REHYRGGQSFYVCPRVSDLPEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYD 888

Query: 875  ILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQAYAYMLVHDVEGLS 934
            +LL TTI+E+G+DVPTANT+++HRAD FGLAQL+QLRGRVGRS  +A+A   +   + L+
Sbjct: 889  VLLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLT 948

Query: 935  KLAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAV 994
              A+RRL+ +Q ++ LG+GF LA HDL+IRGAG +LG++QSG I E+GF+LY  ML  AV
Sbjct: 949  GPAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAV 1008

Query: 995  KSLKAGKEPDLMAPLAVTTEINLGTPALLPSDYCTDVHERLSLYKRLANCEAAERVDDIQ 1054
              LK  +E   +     + +I++GTP ++P +Y  D++ RL LY+RL      + +D   
Sbjct: 1009 AELKGEEE---IHDTGWSPQISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFG 1065

Query: 1055 EELIDRFGRLPPQAQALIETHRLRIAAVPLGVRKIDASDAAISMQF----LPNP 1104
             ELIDRFG LP + Q L++   ++       V K+DA    + +QF     PNP
Sbjct: 1066 AELIDRFGPLPTEVQHLLKIVYVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNP 1119