Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1155 a.a., transcription-repair coupling factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 1033 bits (2672), Expect = 0.0
 Identities = 563/1145 (49%), Positives = 742/1145 (64%), Gaps = 12/1145 (1%)

Query: 13   LPLVKAGQRYTVSGLPGS-ADALALAAYASQHRERVPMLAVVCANAVDAQRLAEEIPWFA 71
            LP   A  R +   LPG  A AL LA     +        +V ++   A  L  E+ +  
Sbjct: 9    LPKTPAKGRVSAVRLPGGVARALTLAEMTCSYAGTT---LIVTSDTPTALVLEAELGYLL 65

Query: 72   P--SLRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQGGQCDIMLVPAQTALYRLAPP 129
                + + L PD ETLPYDSFSPHQDL+S+RL TL +++ G+  +++VP  T + RL P 
Sbjct: 66   KPRGIDICLFPDRETLPYDSFSPHQDLISQRLETLSNLERGKGRLVIVPLTTLMVRLPPK 125

Query: 130  AFLAAYTFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPLPY 189
            AFLAA     K+G++     ++      GY  V  V   GE+++RG ++D+FP G+  P 
Sbjct: 126  AFLAANVLILKKGDRYQLQQMRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPSGASEPL 185

Query: 190  RIDLFGNEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRWRELFEG-DP 248
            RI+LF +E+E+IR FDP+TQRS   V  +R+LP REFP D  A   FR R+R  FE  + 
Sbjct: 186  RIELFDDEVESIRHFDPETQRSSGEVDSIRMLPAREFPTDSQAIEGFRQRYRRTFETVNN 245

Query: 249  SKSTIYKDIGNGVPSAGIEYYLPLFFESSATVFDYLPANSQLAFAGDVPDAIRRFWADTT 308
            +  ++Y+ +   +  AGIE YLPLFF+ +AT+FDYLP   Q+   G +  A      +  
Sbjct: 246  AAESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPEELQIITTGALHQAAEHHLGEIH 305

Query: 309  QRYNFMRHDRERPLLPPAALFLSEEQFFTGAKPLARLVLQGTATGDTVPLAESLPDVSVN 368
             RY   + D  RPLLPP  L+ + E+ F   K   R+ L G   GD    A  LPD+  N
Sbjct: 306  SRYEDRQVDPLRPLLPPKTLYQTTEELFARFKLYPRIDLSGDE-GDKTLEAAPLPDIRAN 364

Query: 369  RRAEDPLVNLEALLLKKDRRVLMCADSAGRRETLLQLFGESGLRPQPIDDYAAFLAGDSH 428
             + + PL +L A   +  +R+   A+S GRRE LL+L G++GL+P+       FLA DS 
Sbjct: 365  HKLKQPLESL-ANWAQGGQRIAFVAESEGRREALLELLGKAGLKPKLFGHLDEFLASDSP 423

Query: 429  FSIVVAPLQSGFAVPSAQGIEPLAFVTEAELYAGTARRTGRRKQEQASAVDSMVRDLAEL 488
              +VVAPL  G  +    G   LA V E EL+     +  RR +++  + D ++++LAEL
Sbjct: 424  HGLVVAPLAMGCQLK--MGKSQLAVVCETELFGERVSQERRRDKQRQLSQDVLIKNLAEL 481

Query: 489  KIGDPVVHSEHGIGRYQGLVSLDLGQGEEEFLHLDYEKGSKLYVPVHQLHVISRYSGADP 548
            K+G PVVH EHG+G YQGL +LD G    E+L L+Y  G KLYVPV  LH+ISR++  + 
Sbjct: 482  KVGQPVVHLEHGVGLYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVSALHLISRFAVGND 541

Query: 549  DTAPLHSLGSGQWDRAKRRAAQQIRDTAAELLNLYARRALRQGHAFELTPKDYEKFAESF 608
            ++APL+ LG+  W +AKR+A ++IRD AAELL++YARR  R G    L   +Y +FA+ F
Sbjct: 542  ESAPLNRLGNESWSKAKRKAIEKIRDVAAELLDVYARREARPGDPCTLDEAEYAQFAQGF 601

Query: 609  GFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAP 668
             FEET DQ  AI AVI DM   K MDRLVCGDVGFGKTEVA+RAAF+AV  GKQV +L P
Sbjct: 602  PFEETVDQETAIKAVIDDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVSSGKQVVVLVP 661

Query: 669  TTLLAEQHFQNLSDRFAEWPVRIVELSRFKTKKEIDGAIKQINDGTADIVIGTHKMLSDD 728
            TTLLA+QHF+N  DRFA+WPVRI  +SRF+T KE    +  + +G  DIVIGTHK+L+ +
Sbjct: 662  TTLLAQQHFENFKDRFADWPVRIEVMSRFRTAKEQQAVLSAMGEGKVDIVIGTHKLLNTE 721

Query: 729  VKFQRLGLVVIDEEHRFGVRQKEMLKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIA 788
            + F+ LGL++IDEEHRFGVRQKE +K +RA VD+LTLTATPIPRTL MA+ G+RD S+IA
Sbjct: 722  LNFESLGLLIIDEEHRFGVRQKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 781

Query: 789  TAPQKRLAIKTFVRREEDGVVREAILRELKRGGQVYFLHNEVDTIENKRAKLAELVPEAR 848
            T P KRLA+KTFVR  +   VREAILRE+ RGGQVY+LHN+V+TIE     + EL+PEAR
Sbjct: 782  TPPAKRLAVKTFVREYDKATVREAILREILRGGQVYYLHNQVETIEKAAQDIRELLPEAR 841

Query: 849  IAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRADKFGLAQLH 908
            +  AHGQM ERELERVM DF  +R N+L+CTTIIETGIDVP+ANTILI RAD FGLAQLH
Sbjct: 842  VVTAHGQMRERELERVMSDFYHQRFNVLVCTTIIETGIDVPSANTILIDRADHFGLAQLH 901

Query: 909  QLRGRVGRSHHQAYAYMLVHDVEGLSKLAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGE 968
            QLRGRVGRSHHQAYAY++    + ++  A++RLEAI  +E+LG+GF LA  DLEIRGAGE
Sbjct: 902  QLRGRVGRSHHQAYAYLMTPHPKLMTVDARKRLEAIDALEDLGAGFMLATQDLEIRGAGE 961

Query: 969  VLGDKQSGEIHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLAVTTEINLGTPALLPSDYC 1028
            +LGD+QSG I +IGF LY +ML  AVK+LK GKEP L   L    EI+L  PALLP DY 
Sbjct: 962  LLGDEQSGHISKIGFSLYMEMLEGAVKALKQGKEPSLRQMLGAQCEIDLRIPALLPDDYV 1021

Query: 1029 TDVHERLSLYKRLANCEAAERVDDIQEELIDRFGRLPPQAQALIETHRLRIAAVPLGVRK 1088
             DV+ RLSLYKR+A C+  + VD+++ ELIDRFG LP   + L+     +  A  LG  K
Sbjct: 1022 NDVNMRLSLYKRIAGCDTEKAVDEMKVELIDRFGLLPDATRNLLTMTVQKHRATRLGATK 1081

Query: 1089 IDASDAAISMQFLPNPPIDAMKIIDLVQKNRHI-KLAGQDKLRIEAKMPDVAVRAQTIKH 1147
            I+      S++F     +D   II L+     + ++ G +KLR          R + ++ 
Sbjct: 1082 IEMHGRGGSIEFGEEHRVDPGFIIGLLSSQPQVYRMDGPNKLRFTMPCETAKERLELLEL 1141

Query: 1148 TLRQL 1152
             L QL
Sbjct: 1142 LLEQL 1146