Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

 Score =  724 bits (1870), Expect = 0.0
 Identities = 445/1180 (37%), Positives = 646/1180 (54%), Gaps = 56/1180 (4%)

Query: 13   LPLVKAGQRYTVSGLPGSADALALAAYASQHRERVPMLAVVCANAVDAQRLAEEIPWFAP 72
            L  +  G+R   +GLP   DAL L   A+  R  VP +  V  + V   RLAE I +F P
Sbjct: 5    LESLAVGRRIEAAGLPEGFDALVLGELAA--RPGVPAVLHVARDDVRLARLAETIAFFHP 62

Query: 73   SLRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQ-------GGQCDIMLVPAQTALYR 125
            ++ +   P W+ +PYD  SP+ ++V+ RL TL  +        GG+  ++L  A   L R
Sbjct: 63   AVEILEFPAWDCVPYDRVSPNVEIVARRLETLSRLSEEPTRQPGGR--LVLTTASAILQR 120

Query: 126  LAPPAFLAAYTFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGS 185
            + P   L    F  + G +LD   L       GY     VM PGEY+VRGG++D+FP G+
Sbjct: 121  VPPRQILERGVFSARVGGRLDLGKLLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGA 180

Query: 186  PLPYRIDLFGNEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRWRELFE 245
            P P R+DLFG+E++++R+FDP +QR+      + L P  E  LD  + + FR  +RELF 
Sbjct: 181  PEPLRLDLFGDELDSLRSFDPVSQRTTGQRDALILRPMSEVVLDKESISRFRSGYRELFG 240

Query: 246  GDPSKSTIYKDIGNGVPSAGIEYYLPLFFESSATVFDYLPANSQLAFAGDVPDAIRRFWA 305
               +   +Y+ I  G+P  G+E++LPLF E   T+F Y+P +  +     +  A+R    
Sbjct: 241  TPSAADALYEAISAGLPFMGMEHWLPLFHEGMDTLFAYVP-DGPVTLDPGLDGALRSRQD 299

Query: 306  DTTQRYNFMR---------HDRERP-------LLPPAALFLSEEQFFTGAKPLARLVLQG 349
               + +   R            E+P        LPP  +FL E++F              
Sbjct: 300  QIFEYFEARRLMESVGDGAKASEKPGGGMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSA 359

Query: 350  TATGDTVPLAESLPD---------VSVNRRAE----DPLVNLEALLLKKDRRVLMCADSA 396
             A  D       + D           +  RA     D L +    L    +RV++ A + 
Sbjct: 360  YAAPDVATEKGVVGDFLGRPGHEFADIRARAGGNVFDALRDHAQALRAAGKRVVLTAATM 419

Query: 397  GRRETLLQLFGESGLRP-QPIDDYAAFLAGDSHFSIVVAP-LQSGFAVPSAQGIEPLAFV 454
            G RE +  +  E GL P    + +A  L      ++V+   L  GF  P       LA +
Sbjct: 420  GARERMTGVLREHGLSPIVTAETWAEALERAKKATVVLTLILDRGFETPD------LAVI 473

Query: 455  TEAELYAGTARRTGRRKQEQASAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVSLDLGQ 514
            +EA++      R  R+K+      D  + D++ L  GD VVH +HGIG+Y+GL +L  G 
Sbjct: 474  SEADVLGDRLSRPVRKKK----LGDKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGG 529

Query: 515  GEEEFLHLDYEKGSKLYVPVHQLHVISRYSGADPDTAPLHSLGSGQWDRAKRRAAQQIRD 574
               + L + Y   ++LYVPV  + V+SRY G++     L  LG   W   K +  Q+IRD
Sbjct: 530  APHDCLRVVYADNNRLYVPVENIEVLSRY-GSEQAGVQLDKLGGVAWQARKAKLKQRIRD 588

Query: 575  TAAELLNLYARRALRQGHAFELTPKDYEKFAESFGFEETPDQAAAIAAVIADMTSGKPMD 634
             A +L+ + A R L+ G         Y++FA  F + ET DQ  AIA  + D+ +G+PMD
Sbjct: 589  MAEQLIGVAAARQLKVGEVISPPEGLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMD 648

Query: 635  RLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHFQNLSDRFAEWPVRIVEL 694
            RL+CGDVGFGKTEVALRAAF   M G+QVA++ PTTLLA QH     +RFA  PVRI +L
Sbjct: 649  RLICGDVGFGKTEVALRAAFATAMSGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQL 708

Query: 695  SRFKTKKEIDGAIKQINDGTADIVIGTHKMLSDDVKFQRLGLVVIDEEHRFGVRQKEMLK 754
            SR  T ++     +++  GT DIV+GTH +L+  V+F+ LGL+++DEE  FGV  KE LK
Sbjct: 709  SRLVTARDTKAVKEEMAAGTLDIVVGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLK 768

Query: 755  TLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVVREAIL 814
             +RA+V VLTLTATPIPRTL +AL G+R+ S+IAT P  RLA++TFV   +  VVREAIL
Sbjct: 769  QMRADVHVLTLTATPIPRTLQLALTGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAIL 828

Query: 815  RELKRGGQVYFLHNEVDTIENKRAKLAELVPEARIAVAHGQMHERELERVMRDFVARRDN 874
            RE  RGGQ +++   +  I+    +L  LVP+ R  VAHGQM    LE VM  F   + +
Sbjct: 829  RERFRGGQCFYVCPRLTDIDKVMERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYD 888

Query: 875  ILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQAYAYMLVHDVEGLS 934
            +L+ T I+E+G+D+P ANTI+IHRAD FGLAQL+QLRGRVGR+  + YAY+ +     +S
Sbjct: 889  VLVATNIVESGLDIPRANTIIIHRADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVS 948

Query: 935  KLAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAV 994
            K A +RL+ +Q ++ LG+GF LA HDL+IRGAG +LGD+QSG I E+G +LY  +L  AV
Sbjct: 949  KTAAKRLDVMQTLDTLGAGFTLASHDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAV 1008

Query: 995  KSLKAGKEPDLMAPLAVTTEINLGTPALLPSDYCTDVHERLSLYKRLANCEAAERVDDIQ 1054
             + + G   +  A  A + +I LGTP L+P  Y  D+  RL LY+R+A       +D++ 
Sbjct: 1009 AAAREGPGVE-EASGAWSPQIQLGTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMA 1067

Query: 1055 EELIDRFGRLPPQAQALIETHRLRIAAVPLGVRKIDASDAAISMQFLPNPPIDAMKIIDL 1114
             E++DRFG LP + + L++   +++        K+DA      + F  N   +   ++  
Sbjct: 1068 AEMVDRFGPLPDEVENLLKVVTIKVLCRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRF 1127

Query: 1115 VQKN-RHIKLAGQDKLRIEAKMPDVAVRAQTIKHTLRQLA 1153
            + +N   +KL    KL           R Q +   +R LA
Sbjct: 1128 IGQNVATVKLRPDHKLVYRRDWEVARERIQGLGKLMRTLA 1167