Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella loihica PV-4

 Score = 1057 bits (2734), Expect = 0.0
 Identities = 569/1114 (51%), Positives = 749/1114 (67%), Gaps = 11/1114 (0%)

Query: 23   TVSGLPGSADALALAAYASQHRERVPMLAVVCANAVDAQRLAEEIPWF-AP-SLRVRLLP 80
            T+S L G+A A++LA    Q+     M  VV  +   A RL  E+ +  AP S+ V L P
Sbjct: 20   TLSQLTGAARAISLAKLCEQYSS---MTLVVTPDTPSALRLEAELGYLLAPKSIPVMLFP 76

Query: 81   DWETLPYDSFSPHQDLVSERLATLHDIQGGQCDIMLVPAQTALYRLAPPAFLAAYTFFFK 140
            D ETLPYDSFSPHQDLVS+RL TL  I      +++VP  T + +L P +FL        
Sbjct: 77   DRETLPYDSFSPHQDLVSQRLETLSRIPSAGHSLVIVPMSTLMVKLPPQSFLTGNVLLLS 136

Query: 141  QGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPLPYRIDLFGNEIET 200
            +G+     A+++Q    GY HV  V   GE++VRG +IDLFPMG+  PYRI+LF +E+E+
Sbjct: 137  KGDNYPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDLFPMGAQSPYRIELFDDEVES 196

Query: 201  IRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRWRELFEGDPSK-STIYKDIGN 259
            IR FDP+TQRS   ++ +RLLP +EFP +DAA   FR R+R  FE    +  +IY+ +  
Sbjct: 197  IREFDPETQRSSGEIESIRLLPAKEFPTNDAAIEGFRQRYRRQFEVVVKEPESIYQMVSR 256

Query: 260  GVPSAGIEYYLPLFFESSATVFDYLPANSQLAFAGDVPDAIRRFWADTTQRYNFMRHDRE 319
             V  AGIE YLPLFF+ +A++FDYLP   QL   GD+ +A +    +  QRY   R D  
Sbjct: 257  KVMPAGIESYLPLFFDETASLFDYLPGECQLVQVGDLENAAKHHLQEINQRYENRRVDPL 316

Query: 320  RPLLPPAALFLSEEQFFTGAKPLARLVLQGT-ATGDTVPLA-ESLPDVSVNRRAEDPLVN 377
            RPLLPP  L+L  EQ F   K L R +++G  ATG  V    E+LP+++ N + + PL++
Sbjct: 317  RPLLPPKDLYLLTEQVFEAFKQLPRFLIKGNEATGTCVEAQLEALPNIAANHKLKQPLIS 376

Query: 378  LEALLLKKDRRVLMCADSAGRRETLLQLFGESGLRPQPIDDYAAFLAGDSHFSIVVAPLQ 437
            L+         +L C +S GRRE LL+L  +  ++P  +D   +F      F ++VAPL 
Sbjct: 377  LKEFA-NGGTPILFCVESEGRREALLELLAKIEIKPALLDHLDSFSHKPQPFGLIVAPLS 435

Query: 438  SGFAVPSAQGIEPLAFVTEAELYAGTARRTGRRKQEQASAVDSMVRDLAELKIGDPVVHS 497
             G      +G    A V E EL+     +  RR +++  + D++++DLAELK+G P+VH 
Sbjct: 436  QGAIYHPKKG-PSWALVCETELFGQRIAQQRRRDKQRQVSQDALIKDLAELKVGQPIVHL 494

Query: 498  EHGIGRYQGLVSLDLGQGEEEFLHLDYEKGSKLYVPVHQLHVISRYSGADPDTAPLHSLG 557
            +HG+  YQGL +LD G    E+L L+Y  G KLYVPV  L++IS+YS    D   L+ LG
Sbjct: 495  DHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVASLNLISQYSVGADDAPQLNKLG 554

Query: 558  SGQWDRAKRRAAQQIRDTAAELLNLYARRALRQGHAFELTPKDYEKFAESFGFEETPDQA 617
            +  W +AKR+A ++IRD AAELL++YARR  R G A  L  ++Y +FA SF FEET DQ 
Sbjct: 555  NESWTKAKRKAIEKIRDVAAELLDVYARRQARPGEACRLDREEYAQFAGSFPFEETVDQE 614

Query: 618  AAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHF 677
             AI AV+ DM S   MDRLVCGDVGFGKTEVA+RAAFVAV  GKQVAIL PTTLLA+QH+
Sbjct: 615  TAIDAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVAILVPTTLLAQQHY 674

Query: 678  QNLSDRFAEWPVRIVELSRFKTKKEIDGAIKQINDGTADIVIGTHKMLSDDVKFQRLGLV 737
            +N  DRFA+WP++I  +SRFKT KE    +KQ+  G  DIVIGTHK+L  + KF+ LGL+
Sbjct: 675  ENFKDRFADWPIKIEVMSRFKTAKEQQAVLKQLELGQVDIVIGTHKLLQSEAKFENLGLL 734

Query: 738  VIDEEHRFGVRQKEMLKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAI 797
            +IDEEHRFGVRQKE +K LRA +D+LTLTATPIPRTL MA+ G+RD S+IAT P KRLA+
Sbjct: 735  IIDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAV 794

Query: 798  KTFVRREEDGVVREAILRELKRGGQVYFLHNEVDTIENKRAKLAELVPEARIAVAHGQMH 857
            KTFVR  +D  VREA+LRE+ RGGQVYFLHN V+TIE +  ++  L+PEAR+  AHGQM 
Sbjct: 795  KTFVREYDDATVREALLREILRGGQVYFLHNSVETIEKRAREIEALLPEARVVTAHGQMR 854

Query: 858  ERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRS 917
            ER+LE+VM DF  ++ N+L+CTTIIETGIDVP+ANTI+I RAD FGLAQLHQLRGRVGRS
Sbjct: 855  ERDLEKVMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIERADNFGLAQLHQLRGRVGRS 914

Query: 918  HHQAYAYMLVHDVEGLSKLAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSGE 977
            HHQAYAY+++   + ++K A +RLEAI  +E+LG+GF LA  DLEIRGAGE+LGD+QSG 
Sbjct: 915  HHQAYAYLMMPHPKRMTKDAIKRLEAIGALEDLGAGFMLATQDLEIRGAGELLGDEQSGH 974

Query: 978  IHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLAVTTEINLGTPALLPSDYCTDVHERLSL 1037
            I +IGF LY +ML  AVKSLK GKEP L   L    EI+L  PALLP DY  DV+ RLSL
Sbjct: 975  ISKIGFTLYMEMLEDAVKSLKEGKEPSLDQMLRGQCEIDLRIPALLPEDYVGDVNIRLSL 1034

Query: 1038 YKRLANCEAAERVDDIQEELIDRFGRLPPQAQALIETHRLRIAAVPLGVRKIDASDAAIS 1097
            YKR+ANC  A+ +D+++ ELIDRFG LP   + L+E    +  A  LG+ KI+      S
Sbjct: 1035 YKRIANCATAQALDELKVELIDRFGLLPQATKNLMEVSLFKHQATALGIAKIEMHAKGGS 1094

Query: 1098 MQFLPNPPIDAMKIIDLVQKN-RHIKLAGQDKLR 1130
            ++F  +  +D   II L+Q   ++ ++ G  KL+
Sbjct: 1095 LEFNNDHCVDPGFIIGLLQSQPQNYRMDGPSKLK 1128