Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1234 a.a., Probable transcription-repair coupling factor Mfd (TRCF) from Mycobacterium tuberculosis H37Rv

 Score =  582 bits (1501), Expect = e-170
 Identities = 406/1124 (36%), Positives = 571/1124 (50%), Gaps = 86/1124 (7%)

Query: 28   PGSADALALAAYASQHRERVPMLAVVCANAVDAQRLAEEIPWFAPSLRVRLLPDWETLPY 87
            P SA  L  +A A Q     P+L VV A   +A  LA E+        V LLP WETLP+
Sbjct: 45   PASARLLVASALARQG----PLL-VVTATGREADDLAAELRGVFGDA-VALLPSWETLPH 98

Query: 88   DSFSPHQDLVSERLATLH------DIQGGQCDIMLVPAQTALYRLAPPAFLAAYTFFFKQ 141
            +  SP  D V  RL  L       D Q G    ++V +  +L +   P            
Sbjct: 99   ERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTV 158

Query: 142  GEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPLPYRIDLFGNEIETI 201
            G++     + A+     Y  V  V R GE++VRGG++D+F   +  P R++ +G+EI  +
Sbjct: 159  GDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEM 218

Query: 202  RAFDPDTQRSLYPVKEVRLLPG---REFPLDDAARTAFRGRWRELFEGDP--------SK 250
            R F    QRS+ P  ++  L     RE  L +  R     R  +L    P        S 
Sbjct: 219  RMFSVADQRSI-PEIDIHTLVAFACRELLLSEDVRA----RAAQLAARHPAAESTVTGSA 273

Query: 251  STIYKDIGNGVPSAGIEYYLP-LFFESSATVFDYLPANSQLAFAGDVPDAIRRFWADTTQ 309
            S +   +  G+   G+E  LP L+ +  A + D LP  + +      P+ +R      T+
Sbjct: 274  SDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCD--PEKVR------TR 325

Query: 310  RYNFMRHDRE--RPLLPPAALFLSEEQF--------FTGAKPLARLVLQGTATGDTVPLA 359
              + +R  RE        AAL  +E Q          +G   L ++      TG      
Sbjct: 326  AADLIRTGREFLEASWSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAARTGHPWWTL 385

Query: 360  ESLPDVSV-------------NRRAEDPLVNLEALLLKKDRRVLMCADSAGRRETLLQLF 406
              L D S              ++R  D +  +    +       + A   G    +++  
Sbjct: 386  SQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRAHIATGGYAALVAPGTGTAHRVVERL 445

Query: 407  GESGLRPQPIDDYAAFLAGDSHFSIVVAPLQSGFAVPSAQGIEPLAFVTEAELYAGTARR 466
             ES      +D   A   G     ++  PL+ G  +P A     L  +TE +L   T  R
Sbjct: 446  SESDTPAGMLDPGQAPKPGV--VGVLQGPLRDGVIIPGAN----LVVITETDL---TGSR 496

Query: 467  TGRRKQEQASAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVSLDLGQGEEEFLHLDYEK 526
                + ++ +A    + D   L  GD VVH +HGIGR+  +V   +G    E+L L+Y  
Sbjct: 497  VSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYAS 556

Query: 527  GS---------KLYVPVHQLHVISRYSGADPDTAPLHSLGSGQWDRAKRRAAQQIRDTAA 577
                       KLYVP+  L  +SRY G       L  LG   W   K +A + +R+ A 
Sbjct: 557  AKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPA--LSRLGGSDWANTKTKARRAVREIAG 614

Query: 578  ELLNLYARRALRQGHAFELTPKDYEKFAESFGFEETPDQAAAIAAVIADMTSGKPMDRLV 637
            EL++LYA+R    GHAF        +  ++FGF ET DQ  AI  V ADM    PMDR++
Sbjct: 615  ELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVI 674

Query: 638  CGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHFQNLSDRFAEWPVRIVELSRF 697
            CGDVG+GKTE+A+RAAF AV  GKQVA+L PTTLLA+QH Q   +R + +PV I  LSRF
Sbjct: 675  CGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRF 734

Query: 698  KTKKEIDGAIKQINDGTADIVIGTHKMLSDDVKFQRLGLVVIDEEHRFGVRQKEMLKTLR 757
                E    I  + DG+ DIVIGTH++L   V+++ LGLVV+DEE RFGV  KE +K+LR
Sbjct: 735  TDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLR 794

Query: 758  AEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVVREAILREL 817
              VDVLT++ATPIPRTL M+L G+R+ S I T P++R  + T+V   +D  +  A+ REL
Sbjct: 795  THVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRREL 854

Query: 818  KRGGQVYFLHNEVDTIENKRAKLAELVPEARIAVAHGQMHERELERVMRDFVARRDNILL 877
             R GQ +++HN V +I+   A++ ELVPEAR+ VAHGQM E  LE  ++ F  R  +IL+
Sbjct: 855  LRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILV 914

Query: 878  CTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQAYAYMLVHDVEGLSKLA 937
            CTTI+ETG+D+  ANT+++ RAD FGL+QLHQLRGRVGRS  + YAY L      L++ A
Sbjct: 915  CTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETA 974

Query: 938  QRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKSL 997
              RL  I Q  ELG+G  +A+ DLEIRGAG VLG +QSG +  +GF LY  ++  A+++ 
Sbjct: 975  YDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETY 1034

Query: 998  KAGKEPDLMAPLAVTTE------INLGTPALLPSDYCTDVHERLSLYKRLANCEAAERVD 1051
            +             T E      I+L   A LP DY      RL  Y+RLA   +   V 
Sbjct: 1035 RDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVA 1094

Query: 1052 DIQEELIDRFGRLPPQAQALIETHRLRIAAVPLGVRKIDASDAA 1095
             + +EL DR+G LP  A+ L    RLR+     G+  + A+ AA
Sbjct: 1095 AVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAA 1138