Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1197 a.a., transcription-repair coupling factor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  585 bits (1509), Expect = e-171
 Identities = 369/999 (36%), Positives = 538/999 (53%), Gaps = 49/999 (4%)

Query: 115  MLVPAQTALYRLAPPAFLAAYTFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVR 174
            +++     L +L P      +     +GE +    +  Q    G+E    V RPGE + R
Sbjct: 141  IIISVDNLLPKLPPVDIFEHHELRLARGEDMSPELVLDQAIDWGFERAQMVSRPGEAARR 200

Query: 175  GGLIDLFPMGSPLPYRIDLFGNEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAART 234
            G ++D+FP G   P R++ FG+ +E IR FD  +QRSL  ++E RLLP          R 
Sbjct: 201  GDILDIFPPGYEKPLRLEFFGDTLEDIRLFDATSQRSLASLEEFRLLPVAPVVGCREYRE 260

Query: 235  AFRGRWRELFEG---DPSKSTIYKDIGNGVPSAGIEYYLP-LFFESSATVFDYLPANS-- 288
            A   RW++L +    D  ++     +  G  +      LP  ++E++  + D+LP ++  
Sbjct: 261  AAARRWKQLRKDGVIDGEQAAALARMAEGEVTG----LLPGAWYENATWMEDWLPRDAVW 316

Query: 289  ---QLAFAGDVPDAIRRFWADTTQR-YNFMRHDRERPLLPPAALFLSEEQFFTGAKPLA- 343
                 A      +A R  W     R Y+  R  + RPL+   A    E Q     + +A 
Sbjct: 317  LLPDRADLSTALEAARTNWEALLDRQYDEHRLRQPRPLVLRDA---DEAQAAWRGRSVAH 373

Query: 344  --RLVLQGTATGDTVP---------LAESLPDVSVNR-RAEDPLVNLEALLLKKDRRVLM 391
              RLV+    TG  +P         L  + P V V+  R    LV        + R+V++
Sbjct: 374  FERLVMGVERTGVDLPERRLHAFRDLFAATPSVPVDEDRPWQRLVTALRQWTSERRQVVL 433

Query: 392  CADSAGRRETLLQLFGESGLRPQPIDDYAAFLAGDSHFSIVVAPLQSGFAVPSAQGIEPL 451
               S   R   L+L  + G+RP        +   D     +VAP ++G           L
Sbjct: 434  SFASDRSRRKFLKLAEQDGVRPN-----LRYSPADRGLYALVAPFRAGI---------DL 479

Query: 452  AFVTEAELYAGTARRTGRRKQEQASAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVSLD 511
            A+     +     +    R+    +     +    +L  GD +VH ++G+GR+ GL  +D
Sbjct: 480  AWDNVLVIGEDVLQPKADRQPRVPTGAFLGLDKYDDLSPGDLLVHRDYGVGRFGGLHRMD 539

Query: 512  LGQGEEEFLHLDYEKGSKLYVPVHQLHVISRYSGADPDTAPLHSLGSGQWDRAKRRAAQQ 571
            LG    +FL L+Y    +LY+PV +L +I R+ G D     L  LG   W   K +A + 
Sbjct: 540  LGGVANDFLLLEYAGEDRLYLPVDRLSLIQRFKGGDDSVPSLDKLGGSGWRACKDKARKA 599

Query: 572  IRDTAAELLNLYARRALRQGHAFELTPKDYEKFAESFGFEETPDQAAAIAAVIADMTSGK 631
            I   AA+L+ +YA R + +G+ +    + Y +F  SFGFEETPDQA AI  V+ DM   +
Sbjct: 600  IEKIAADLVQMYAYRKVAKGYRYGPLGELYREFEASFGFEETPDQARAIQDVLDDMEKPE 659

Query: 632  PMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHFQNLSDRFAEWPVRI 691
            PMDRLVCGDVGFGKTEVALRAAF A   G+QVA+L PTT+LAEQH+Q    R A +PV +
Sbjct: 660  PMDRLVCGDVGFGKTEVALRAAFRAAAEGRQVALLCPTTVLAEQHYQTFRSRLAGFPVNV 719

Query: 692  VELSRFKTKKEIDGAIKQINDGTADIVIGTHKMLSDDVKFQRLGLVVIDEEHRFGVRQKE 751
              LSRF ++++    ++    G  DI+IGTH++LSDDV+   LGL+V+DEE RFGVR KE
Sbjct: 720  GMLSRFVSRQKQKEVLQAAARGQIDILIGTHRLLSDDVQLPNLGLLVLDEEQRFGVRHKE 779

Query: 752  MLKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVVRE 811
             LK  R  VD LTLTATPIPRTL +++ G+R+ SVI TAP +R  + T +   +   +R+
Sbjct: 780  KLKKFRKNVDALTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVATALIERDQNALRQ 839

Query: 812  AILRELKRGGQVYFLHNEVDTIENKRAKLAELVPEARIAVAHGQMHERELERVMRDFVAR 871
             + RE+ R GQV+++HN V  +E     +  LVP AR+ +AHGQM ERELE  M  F   
Sbjct: 840  ILEREIAREGQVFWVHNRVQGLERVAEFVRGLVPTARVGMAHGQMGERELEDTMHKFWHG 899

Query: 872  RDNILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQAYAYMLVHDVE 931
              ++L+CT I+E+G+D P ANT+++ +A  FGL QL+QLRGRVGRS  QAYA  +V D E
Sbjct: 900  ELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQLYQLRGRVGRSDRQAYAVFVVSDAE 959

Query: 932  GLSKLAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLN 991
             L + A++R+  I +++ LG+GF +AM DL +RGAG +LG+ QSG +  +G  LY +ML 
Sbjct: 960  RLPEQARQRMRIILELDYLGAGFQVAMEDLRLRGAGNILGEVQSGHMTRLGLDLYLEMLE 1019

Query: 992  AAVKSLKAGKEPDLMAPLAVTTEINLGTPALLPSDYCTDVHERLSLYKRLANCEAAERVD 1051
              V  LK     + + P     E+N+G  A +P  Y  D  ERL  YK L++   A  + 
Sbjct: 1020 EEVARLKGAPPRESVEP-----ELNIGLAAHIPETYIGDARERLKFYKALSSAPDAATLQ 1074

Query: 1052 DIQEELIDRFGRLPPQAQALIETHRLRIAAVPLGVRKID 1090
            D++ EL DRFG  PP+ +  +    L+     L V + D
Sbjct: 1075 DVEMELRDRFGPCPPELRNFLAVLVLKRFLATLQVVRAD 1113