Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1177 a.a., transcription-repair-coupling factor from Marinobacter adhaerens HP15

 Score = 1084 bits (2803), Expect = 0.0
 Identities = 569/1173 (48%), Positives = 777/1173 (66%), Gaps = 35/1173 (2%)

Query: 4    ANRPVPFANLPLV------KAGQRYTVSGLPGSADALALAAYASQHRERVPMLAVVCANA 57
            + RP P   LPL+      +     T   L GS++ALA+   A  H+    +  V+  + 
Sbjct: 6    STRPSP---LPLIAPEFPSRPADHRTWGQLHGSSEALAICESARAHKG---LTLVITRST 59

Query: 58   VDAQRLAEEIPWFA-------------PSLRVRLLPDWETLPYDSFSPHQDLVSERLATL 104
             DA RL + + +F                L +  LPDWETLPYD FSPHQD++S R+ TL
Sbjct: 60   ADAIRLEQAMRFFLGLPPEEDGPAVSDDGLELLSLPDWETLPYDLFSPHQDIISRRIRTL 119

Query: 105  HDIQGGQCDIMLVPAQTALYRLAPPAFLAAYTFFFKQGEKLDEAALKAQFTLAGYEHVSA 164
            H +      +++VPA+T ++RL P  +L   T   + G+ LD  + + Q   AGY H   
Sbjct: 120  HRLPATSHGVLVVPARTLMHRLPPVNYLQGNTLLLEVGQSLDIESWRMQLEAAGYRHAEN 179

Query: 165  VMRPGEYSVRGGLIDLFPMGSPLPYRIDLFGNEIETIRAFDPDTQRSLYPVKEVRLLPGR 224
            V   GEY+VRG ++D+FPMG+  P+RIDLF +EIET+R FDP+TQRS+  ++ + LLP  
Sbjct: 180  VYEHGEYAVRGAILDIFPMGASQPFRIDLFDDEIETLRTFDPETQRSIDRIERIELLPAF 239

Query: 225  EFPLDDAARTAFRGRWRELFEGDPSKSTIYKDIGNGVPSAGIEYYLPLFFESSATVFDYL 284
            EFP    AR+ FR RW E F      + IY+D+ +G+   GIEYYLPLFF+ +AT+FDYL
Sbjct: 240  EFPWHKEARSGFRSRWFEQFPDADKDTPIYQDVTHGITPPGIEYYLPLFFDETATLFDYL 299

Query: 285  PANSQLAFAGDVPDAIRRFWADTTQRYNFMRHDRERPLLPPAALFLSEEQFFTGAKPLAR 344
            P  + +  A  + DA+  F ++T  RY   RHDR RP+LPP  LFL +E+ F   K   R
Sbjct: 300  PGATHVFTADGLNDAVSHFDSETRNRYEDRRHDRLRPILPPKRLFLQQEELFGQLKAFPR 359

Query: 345  LVLQGT---ATGDTVPLAESLPDVSVNRRAEDPLVNLEALLLKKDRRVLMCADSAGRRET 401
            + +      A G       +LPD++++ RA DP   L+  L + D  VL+CA+S+GRRE 
Sbjct: 360  VTVSAETKDAAGSVNCPTTTLPDIAMDGRAADPAGRLKRFLGEFDGHVLICAESSGRREA 419

Query: 402  LLQLFGESGLRPQPIDDYAAFLAG-DSHFSIVVAPLQSGFAVPSAQGIEPLAFVTEAELY 460
            L++  GE G+  + +  + AFL   +S  +I +AP++ G  +P       +A +TE  L+
Sbjct: 420  LMENLGEQGVELKTLSGWQAFLDDKESSVAITIAPMEQGLVLPE----HSVALITETALF 475

Query: 461  AGTARRTGRRKQEQASAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVSLDLGQGEEEFL 520
             G      RR+++     D+  RDL+EL+IG PVVH +HG+GRY GL ++ +     EFL
Sbjct: 476  -GERVLQRRRREKPTETDDAGFRDLSELRIGAPVVHIDHGVGRYLGLETITVEGEASEFL 534

Query: 521  HLDYEKGSKLYVPVHQLHVISRYSGADPDTAPLHSLGSGQWDRAKRRAAQQIRDTAAELL 580
             L Y  GSKLYVPV  LH+ISRY+G D + APLH LG+ +W  AK++A ++IRDTAAELL
Sbjct: 535  MLGYAGGSKLYVPVSSLHLISRYAGNDTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELL 594

Query: 581  NLYARRALRQGHAFELTPKDYEKFAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGD 640
            ++YARR  R+G +FE   + Y  FA  F FEETPDQ  AI +V  DMTS +PMDRLVCGD
Sbjct: 595  DVYARREARKGFSFEDPKEAYRAFAAGFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGD 654

Query: 641  VGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHFQNLSDRFAEWPVRIVELSRFKTK 700
            VGFGKTEVA+RAAF+A   GKQVA+L PTTLLA+QH+++  DRF++ PV++  LSRF+T 
Sbjct: 655  VGFGKTEVAMRAAFLATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTA 714

Query: 701  KEIDGAIKQINDGTADIVIGTHKMLSDDVKFQRLGLVVIDEEHRFGVRQKEMLKTLRAEV 760
             +   A++ + +G ADIVIGTHK+L  D+KF+ LGLV+IDEEHRFGV+QKE LK LRAEV
Sbjct: 715  GQTSKALEAVENGRADIVIGTHKLLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEV 774

Query: 761  DVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVVREAILRELKRG 820
            D+L LTATPIPRTL MA+  LRD S+IAT P +RL++KTFVR++++ +V+EAILRE+ RG
Sbjct: 775  DMLNLTATPIPRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQKDNAMVKEAILREILRG 834

Query: 821  GQVYFLHNEVDTIENKRAKLAELVPEARIAVAHGQMHERELERVMRDFVARRDNILLCTT 880
            GQVYFLHN+V TIE     L  L+PEAR+ VAHGQM ER+LE++M DF  +R N+L+CTT
Sbjct: 835  GQVYFLHNDVATIEKTAEDLRSLIPEARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTT 894

Query: 881  IIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQAYAYMLVHDVEGLSKLAQRR 940
            IIETGIDVP+ANTI+I RADKFGLAQLHQLRGRVGRSHHQAYAY+L    + ++  A++R
Sbjct: 895  IIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKR 954

Query: 941  LEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKSLKAG 1000
            L+AI + ++LG+GF LA HDLEIRGAGE+LG++QSG+I  IGF LY  +L+ AVK+++ G
Sbjct: 955  LDAISEAQDLGAGFMLATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREG 1014

Query: 1001 KEPDLMAPLAVTTEINLGTPALLPSDYCTDVHERLSLYKRLANCEAAERVDDIQEELIDR 1060
            + P+   PL+  TE+NL  PAL+P DY  DVH RL LYKR+A+ ++ E + ++Q E+IDR
Sbjct: 1015 RTPNADLPLSHGTEMNLRIPALIPEDYLPDVHNRLMLYKRIASVDSPEALKELQVEMIDR 1074

Query: 1061 FGRLPPQAQALIETHRLRIAAVPLGVRKIDASDAAISMQFLPNPPIDAMKIIDLVQK-NR 1119
            FG LP  A+ LI    LR+ A  LG+ K+DA      ++F  + P+D + ++  VQ    
Sbjct: 1075 FGLLPDPAKNLIRQTELRLRAEALGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPD 1134

Query: 1120 HIKLAGQDKLRIEAKMPDVAVRAQTIKHTLRQL 1152
              +L G +  R   K      +   I   L +L
Sbjct: 1135 QYRLEGANSFRFRLKDATTGGKLDGISRMLGEL 1167