Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1148 a.a., transcription-repair coupling factor from Klebsiella michiganensis M5al

 Score = 1020 bits (2637), Expect = 0.0
 Identities = 555/1160 (47%), Positives = 758/1160 (65%), Gaps = 26/1160 (2%)

Query: 1    MPEANRPVPFANLPLVKAGQRYTVSGLPGSADALALAAYASQHRERVPMLAVVCANAVDA 60
            MPE  R     +LP VKAG +  +  L G+A A  +A  A +H   V ++A    NA+  
Sbjct: 1    MPEQYR----YSLP-VKAGDQRQLGELTGAACATLVAEMAERHGGPVVLIAPDMQNAL-- 53

Query: 61   QRLAEEIPWFAPSLRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQGGQCDIMLVPAQ 120
             RL +EI  F  S+ V  L DWETLPYDSFSPHQD++S RLATL+ +   +  ++++P  
Sbjct: 54   -RLNDEIRQFTDSM-VAGLADWETLPYDSFSPHQDIISSRLATLYQLPTMERGVLIIPVS 111

Query: 121  TALYRLAPPAFLAAYTFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDL 180
            T + R+ P  FL  +    K+G++L   AL+AQ   AGY HV  VM  GEY+ RG L+DL
Sbjct: 112  TLMQRVCPHNFLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDL 171

Query: 181  FPMGSPLPYRIDLFGNEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRW 240
            FPMGS  PYR+D F +EI+++R FD D+QR+L  V  + LLP  EFP D AA   FR +W
Sbjct: 172  FPMGSEQPYRLDFFDDEIDSLRLFDVDSQRTLEEVASINLLPAHEFPTDQAAIELFRSQW 231

Query: 241  RELFEGDPSKSTIYKDIGNGVPSAGIEYYLPLFF-ESSATVFDYLPANSQLAFAGDVPDA 299
            R+ FE       IY+ +  G   AGIEY+ PLFF E    +F Y PA + +   GD+  +
Sbjct: 232  RDRFEVKRDAEHIYQQVSKGTLPAGIEYWQPLFFNEPLPPLFSYFPAKTLIVNTGDLEAS 291

Query: 300  IRRFWADTTQRYNFMRHDRERPLLPPAALFLSEEQFFTGAKPLARLVLQGTATGDTVPLA 359
              RF  +T  R+     D  RPLLP   L+L  ++ F+  K   R+ L+     +     
Sbjct: 292  AERFQNETRARFENRGVDPMRPLLPTEQLWLRSDELFSELKKWPRVQLKTERLAEKAANT 351

Query: 360  ----ESLPDVSVNRRAEDPLVNLEALLLKKDRRVLMCADSAGRRETLLQLFGESGLRPQP 415
                + L ++++  + + PL NL   L      V+   +S GRRE L ++     + P+ 
Sbjct: 352  NLGYQKLHELAIQAQNKAPLDNLRRFLESFSGPVIFSVESEGRREALGEMLARIKIAPKH 411

Query: 416  IDDYAAFLAGDSHFSIVVAPLQSGFAVPSAQGIEPLAFVTEAELYAGTARRTGRRKQEQA 475
            I       A   +  I  A  + GF + S +    LA + E++L      R  RR+Q+  
Sbjct: 412  ILRLEEATANGRYLMIGAA--EHGF-IDSQRN---LALICESDLLG---ERVARRRQDSR 462

Query: 476  SAV--DSMVRDLAELKIGDPVVHSEHGIGRYQGLVSLDLGQGEEEFLHLDYEKGSKLYVP 533
              +  D+++R+LAEL IG PVVH EHG+GRY G+ +L+ G    E+L L Y   +KLYVP
Sbjct: 463  RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGINGEYLMLTYANDAKLYVP 522

Query: 534  VHQLHVISRYSGADPDTAPLHSLGSGQWDRAKRRAAQQIRDTAAELLNLYARRALRQGHA 593
            V  LH+ISRY+G   + APLH LG   W RA+++AA+++RD AAELL++YA+RA + G+A
Sbjct: 523  VSSLHLISRYAGGAEENAPLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKAGYA 582

Query: 594  FELTPKDYEKFAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAA 653
            F+   + Y+ F + F FE TPDQA AI AV++DM     MDRLVCGDVGFGKTEVA+RAA
Sbjct: 583  FKHDKEQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 642

Query: 654  FVAVMGGKQVAILAPTTLLAEQHFQNLSDRFAEWPVRIVELSRFKTKKEIDGAIKQINDG 713
            F+AV   KQVA+L PTTLLA+QHF N  DRFA WPVRI  LSRF++ KE    ++Q+ +G
Sbjct: 643  FLAVENHKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEG 702

Query: 714  TADIVIGTHKMLSDDVKFQRLGLVVIDEEHRFGVRQKEMLKTLRAEVDVLTLTATPIPRT 773
              DI+IGTHK+L  DVK + LGL+++DEEHRFGVR KE +K +RA+VD+LTLTATPIPRT
Sbjct: 703  KIDILIGTHKLLQPDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRT 762

Query: 774  LGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVVREAILRELKRGGQVYFLHNEVDTI 833
            L MA+ G+RD S+IAT P +RLA+KTFVR  +  VVREAILRE+ RGGQVY+L+N+V+ I
Sbjct: 763  LNMAMSGMRDLSIIATPPARRLAVKTFVREYDALVVREAILREVLRGGQVYYLYNDVENI 822

Query: 834  ENKRAKLAELVPEARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANT 893
            +    +LAELVPEARIA+ HGQM ERELERVM DF  +R N+L+CTTIIETGID+PTANT
Sbjct: 823  QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882

Query: 894  ILIHRADKFGLAQLHQLRGRVGRSHHQAYAYMLVHDVEGLSKLAQRRLEAIQQMEELGSG 953
            I+I RAD FGLAQLHQLRGRVGRSHHQAYA++L    + ++  AQ+RLEAI  +E+LG+G
Sbjct: 883  IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAG 942

Query: 954  FYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLAVTT 1013
            F LA HDLEIRGAGE+LG+ QSG +  IGF LY ++L  AV +LKAG+EP L    +  T
Sbjct: 943  FALATHDLEIRGAGELLGEDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT 1002

Query: 1014 EINLGTPALLPSDYCTDVHERLSLYKRLANCEAAERVDDIQEELIDRFGRLPPQAQALIE 1073
            E+ L  P+LLP D+  DV+ RLS YKR+A+ +    +++I+ ELIDRFG LP  A+ L++
Sbjct: 1003 EVELRMPSLLPDDFIPDVNTRLSFYKRVASAKNENELEEIKVELIDRFGLLPDPARNLLD 1062

Query: 1074 THRLRIAAVPLGVRKIDASDAAISMQFLPNPPIDAMKIIDLVQKN-RHIKLAGQDKLRIE 1132
              RLR  A  LG+RK+++++   +++F     ++ + +I L+QK  +H +L G  +L+  
Sbjct: 1063 IARLRQQAQKLGIRKLESNEKGGTIEFNEKNNVNPVWLISLLQKQPQHYRLDGPTRLKFM 1122

Query: 1133 AKMPDVAVRAQTIKHTLRQL 1152
              + +   R + ++  +RQL
Sbjct: 1123 QDLAERKTRMEWVRQFMRQL 1142