Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1160 a.a., transcription-repair coupling factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  610 bits (1574), Expect = e-178
 Identities = 375/1021 (36%), Positives = 545/1021 (53%), Gaps = 43/1021 (4%)

Query: 71   APSLRVRLLPDWETLPYDSFSP-HQDLVSERLATLHDIQGGQCDI---MLVPAQTALYRL 126
            +P ++ R    W  +P       ++D  + R+A L  +  GQ  +   +L+     L +L
Sbjct: 72   SPLVKPRWESRWVVMPQHPLGARNRDAWASRMAALFAL--GQKRVPQGVLITVDNFLSKL 129

Query: 127  APPAFLAAYTFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSP 186
             P    A++      G+++    +  Q    G++ V  V RPGE +VRG ++D++P G  
Sbjct: 130  PPADLFASHELTLACGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGDIVDIYPPGYE 189

Query: 187  LPYRIDLFGNEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRWRELFEG 246
             P R++ FG  +E IR FD   QRSL  + E+ LLP     L    R+    RW+ LF  
Sbjct: 190  RPLRLEFFGETLEEIRLFDASNQRSLGKLDEMVLLPVSPVVLSAELRSKATARWKRLFSK 249

Query: 247  DPSKSTIYKDIGNGVPSAGIEYYLPLFFESSATVFDYLPANSQLAFAG-----DVPDAIR 301
                   Y  +  G+   G       ++E+   V ++LP ++     G     D  +A +
Sbjct: 250  GMLTEEQYAGLLRGIERHGEGLMPGAYYEAPTVVEEWLPRDAAWILPGRKELVDAVEAAQ 309

Query: 302  RFWA---DTTQRYNFMRHDRERPLLPPAAL-FLSEEQFFTGAKPLARLVLQGTATGDTVP 357
            + W    D        R  R   L   A +  L EE+   G +P   LV+    TG  +P
Sbjct: 310  QNWEALFDKQAEEGGARQPRGLVLRDAAPVRQLYEEKDSAGFEP---LVMGVERTGVDMP 366

Query: 358  ------LAESLPDVSVNRRAEDPLVNLEALLLKKDRRVLMCADSAGRRETLLQLFGESGL 411
                    +  P      R    LV      +    RVL+C  +   R   L+L  + G+
Sbjct: 367  ERKLHGFVDLFPAPDARDRPWQALVAGLHRFVATHARVLLCFGNERGRRKFLKLAEQDGI 426

Query: 412  RPQPIDDYAAFLAGDSHFSIVVAPLQSGFAVPSAQGIEPLAFVTEAELYAGTARRTGRRK 471
             P        +         VVAP ++G           LA+     +     +    R 
Sbjct: 427  TPT-----LRYDPKGRGLMAVVAPYRAGV---------ELAWDGTLVIGEDVLQPKTDRS 472

Query: 472  QEQASAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVSLDLGQGEEEFLHLDYEKGSKLY 531
               AS     +     L+ GD +VH ++G+ R+ GL  +DLG    +FL L+Y    +LY
Sbjct: 473  ARVASGAFRGLDKHEGLQPGDLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAGDDRLY 532

Query: 532  VPVHQLHVISRYSGADPDTAPLHSLGSGQWDRAKRRAAQQIRDTAAELLNLYARRALRQG 591
            +PV +L ++ R+ GAD     L  LG G W  +K +A + I   AA+L+ +YA R + +G
Sbjct: 533  LPVDRLSLVQRFKGADDTKPSLDRLGGGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKG 592

Query: 592  HAFELTPKDYEKFAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALR 651
            + +    + Y +F  SFGFEETPDQA AI  V+ DM    PMDRLVCGDVGFGKTEVALR
Sbjct: 593  YTYGPIGELYREFEASFGFEETPDQARAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALR 652

Query: 652  AAFVAVMGGKQVAILAPTTLLAEQHFQNLSDRFAEWPVRIVELSRFKTKKEIDGAIKQIN 711
            AAF A   G+QVA+L PTT+LAEQH+Q    R A +PV +  LSRF +K++    +    
Sbjct: 653  AAFRAASEGRQVALLCPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAA 712

Query: 712  DGTADIVIGTHKMLSDDVKFQRLGLVVIDEEHRFGVRQKEMLKTLRAEVDVLTLTATPIP 771
             G  DI+IGTH++LSDDV+   LGL+V+DEE RFGVR KE LK  R  VD LTLTATPIP
Sbjct: 713  KGHVDILIGTHRLLSDDVRLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIP 772

Query: 772  RTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVVREAILRELKRGGQVYFLHNEVD 831
            RTL +++ G+R+ SVI TAP +R  + T +   +D  ++  + RE+ R GQV+++HN V 
Sbjct: 773  RTLQLSMSGIRELSVIETAPPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQ 832

Query: 832  TIENKRAKLAELVPEARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTA 891
             +E     + +LVP+AR+ +AHGQM ER LE  M  F     ++L+CT I+E+G+D P A
Sbjct: 833  GLERTTEYVRKLVPDARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRA 892

Query: 892  NTILIHRADKFGLAQLHQLRGRVGRSHHQAYAYMLVHDVEGLSKLAQRRLEAIQQMEELG 951
            NT+++ +A  FGL QL+QLRGRVGRS  QAYA  +V D + LS +A+ R+  I  M+ LG
Sbjct: 893  NTLIVDQAQMFGLGQLYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLG 952

Query: 952  SGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLAV 1011
            +GF +AM DL IRGAG +LG+ QSG +  +G +L+ +ML  AV  LK     +     +V
Sbjct: 953  AGFQVAMEDLRIRGAGNILGEAQSGHMTRVGLELFLEMLEEAVTRLKGDPPRE-----SV 1007

Query: 1012 TTEINLGTPALLPSDYCTDVHERLSLYKRLANCEAAERVDDIQEELIDRFGRLPPQAQAL 1071
             TE+N+G PA +P  Y  D  +RL  YK L++   A    DI+ E+ DR+G  PP+ +  
Sbjct: 1008 ETELNIGIPAHIPEGYIEDARDRLRFYKALSSATDAAAQQDIEMEMRDRYGVFPPELETF 1067

Query: 1072 I 1072
            +
Sbjct: 1068 L 1068