Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  669 bits (1725), Expect = 0.0
 Identities = 405/1098 (36%), Positives = 604/1098 (55%), Gaps = 34/1098 (3%)

Query: 24   VSGLPGSADALALAAYASQHRERVPMLAVVCANAVDAQRLAEEIPWFAPSLRVRLLPDWE 83
            V+G+P   DA  +   AS+   +   +A    +      +A  +   AP + V   P W+
Sbjct: 12   VTGVPEGFDAQIVLREASRPDGQAVFVA---RDDKRMAAMAAALAVTAPQIPVLRFPGWD 68

Query: 84   TLPYDSFSPHQDLVSERLATLHDIQGGQCD--IMLVPAQTALYRLAPPAFLAAYTFFFKQ 141
             LPYD  SP+ ++ + R+ATL  +  G     ++L        R+   A LA  +F  + 
Sbjct: 69   CLPYDRSSPNPEISATRMATLAALAHGVPGPFVLLTTLSAVTQRVPARATLAEASFSAQV 128

Query: 142  GEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPLPYRIDLFGNEIETI 201
            G ++DEAAL+   T  G+     V  PG+Y++RGG+ID+FP G   P R+DLFG+ ++  
Sbjct: 129  GGRIDEAALRQFLTRMGFVQAPTVTEPGDYAIRGGIIDIFPPGQSGPVRLDLFGDVLDGA 188

Query: 202  RAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRWRELFEGDPSKSTIYKDIGNGV 261
            R FD  TQR+   +  + L P  E  LD AA T FR  +R  F    +   +Y+ +  G 
Sbjct: 189  RRFDAATQRTTEKLDAIELAPVSEIILDPAAITRFRQSYRIEFGAAGTDDPLYEAVSAGR 248

Query: 262  PSAGIEYYLPLFFESSATVFDYLPANSQLAFAGDVPDAIRRF-WADTTQRYNFMRHDRER 320
              AG+E++LP F +   T+ DY+P  S +    D  +A+    W     +Y   RH   +
Sbjct: 249  KHAGMEHWLPFFHDRLETLLDYVPEASLIL--DDQFEAMHLSRWEGIKDQYETRRHALAQ 306

Query: 321  P--------LLPPAALFL--SEEQFFTGAKPLARLVLQGTATGDTVPLAESLPDVSVNRR 370
                       PP  L++  ++E      K   +L +  +A+G  V  A      +    
Sbjct: 307  KGQMGTVYKPAPPETLYIPPADETALLATKRTLQLSVLPSASGPGVTDAGGRIGRNFAPE 366

Query: 371  AEDPLVNL-EALLL-----KKDRRVLMCADSAGRRETLLQLFGESGLRP-QPIDDYAAFL 423
             +     L EAL       +K  +V++ + S G RE L  L  +  L     I   +   
Sbjct: 367  RQSQATGLFEALATHITEKRKTSQVVIASWSEGARERLRGLLEDQDLSGLTEIARLSDIP 426

Query: 424  AGDSHFSIVVAPLQSGFAVPSAQGIEPLAFVTEAELYAGTARRTGRRKQEQASAVDSMVR 483
             G     ++V  L  GF  P  +    L  ++E ++      RT +RK+      ++ ++
Sbjct: 427  EGTGGVHLLVWALDEGFEGPDHRSTR-LTVISEQDVLGDRLIRTTKRKRR----AENFLQ 481

Query: 484  DLAELKIGDPVVHSEHGIGRYQGLVSLDLGQGEEEFLHLDYEKGSKLYVPVHQLHVISRY 543
            +   L  GD VVH +HG+G ++GL ++       E L L+Y  G +LY+PV  + ++SR+
Sbjct: 482  EATSLSAGDLVVHVDHGVGAFKGLETVTAMGAPHECLLLEYAGGDRLYLPVENIELLSRF 541

Query: 544  SGADPDTAPLHSLGSGQWDRAKRRAAQQIRDTAAELLNLYARRALRQGHAFELTPKDYEK 603
                 +   L  LG G W   K +  ++IR+ A +L+ + A RALR+    E  P  +E 
Sbjct: 542  G---QEIGMLDKLGGGAWQAKKAKLKERIREMADKLIRIAAERALRRAPMLEPPPDMWEA 598

Query: 604  FAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQV 663
            F+  F + ET DQ +AI  V+ D+ +G PMDRL+CGDVGFGKTEVA+RAAF+A + G QV
Sbjct: 599  FSARFPYTETDDQLSAIEDVVHDLAAGTPMDRLICGDVGFGKTEVAMRAAFIAALSGVQV 658

Query: 664  AILAPTTLLAEQHFQNLSDRFAEWPVRIVELSRFKTKKEIDGAIKQINDGTADIVIGTHK 723
            A++APTTLLA QH+++ +DRF  +P+ +  LSRF   K      K +  G+ DIV+GTH 
Sbjct: 659  AVIAPTTLLARQHYKSFADRFRGFPLEVRPLSRFVPAKAAADTRKGLAAGSVDIVVGTHA 718

Query: 724  MLSDDVKFQRLGLVVIDEEHRFGVRQKEMLKTLRAEVDVLTLTATPIPRTLGMALEGLRD 783
            +L+  V+F  LGL++IDEE RFGV  KE LK LR++V VLTLTATPIPRTL ++L G+RD
Sbjct: 719  LLAKGVRFHNLGLLIIDEEQRFGVGHKERLKELRSDVHVLTLTATPIPRTLQLSLSGVRD 778

Query: 784  FSVIATAPQKRLAIKTFVRREEDGVVREAILRELKRGGQVYFLHNEVDTIENKRAKLAEL 843
             S+I T P  RL+I+T+V   +   +REA+LRE  RGGQ +F+   +  I    A L + 
Sbjct: 779  LSIIGTPPVDRLSIRTYVSEFDPVTLREALLREHYRGGQSFFVVPRIKDIPEIEAFLRDQ 838

Query: 844  VPEARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRADKFG 903
            VPE    VAHGQM   EL+  M  F   + ++LL TTI+E+G+D+PTANT++IHRAD FG
Sbjct: 839  VPEVSFVVAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIIHRADMFG 898

Query: 904  LAQLHQLRGRVGRSHHQAYAYMLVHDVEGLSKLAQRRLEAIQQMEELGSGFYLAMHDLEI 963
            L+QL+Q+RGRVGR+  +AYAY+       L+  A++RL  +  ++ LG+GF LA  DL+I
Sbjct: 899  LSQLYQIRGRVGRAKTRAYAYLTTKPRMKLTPAAEKRLRVLGSLDSLGAGFTLASQDLDI 958

Query: 964  RGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLAV-TTEINLGTPAL 1022
            RGAG +LG+ QSG+  E+GF+LY  ML  A+  +K+G    L         +INLG P L
Sbjct: 959  RGAGNLLGEAQSGQFREVGFELYQSMLEEAIGKIKSGSLEGLTDDDGQWAPQINLGVPVL 1018

Query: 1023 LPSDYCTDVHERLSLYKRLANCEAAERVDDIQEELIDRFGRLPPQAQALIETHRLRIAAV 1082
            +P  Y  D+  RL LY+RL+       ++    ELIDRFG+LP +   L+   R++    
Sbjct: 1019 IPEAYVPDLDVRLGLYRRLSQLTTKVELEGFAAELIDRFGKLPKEVNTLLLIVRIKAMCK 1078

Query: 1083 PLGVRKIDASDAAISMQF 1100
              G+ K+D      ++QF
Sbjct: 1079 KAGIAKLDGGPKGATVQF 1096