Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1196 a.a., transcription-repair coupling factor from Bifidobacterium breve UCC2003

 Score =  617 bits (1592), Expect = e-180
 Identities = 407/1129 (36%), Positives = 616/1129 (54%), Gaps = 82/1129 (7%)

Query: 24   VSGLP-GSADALALA-AYASQHRERVPMLAVVCANAVDAQRLAEEIPWFAPSLR-VRLLP 80
            ++G+P G   ALA A A         P++ VV +     + +     W+      +  L 
Sbjct: 56   LAGVPEGLRPALAAAIAQGVNGGAGKPVVLVVASGREAEETVGSLRSWYDGDPNDIAQLE 115

Query: 81   DWETLPYDSFSPHQDLVSERLATLHDIQG--------GQCDIMLVPAQTALYRLAPP-AF 131
             WETLP++  SP  D V+ R+A    ++         G   I+++P ++ +  +      
Sbjct: 116  AWETLPHERLSPRADTVASRMAVFRRLKHPSDANPMFGPIRILVMPIRSLIQPVVQGLGD 175

Query: 132  LAAYTFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPLPYRI 191
            +    F   +   LDEAA +       Y  V  VM  GE++VRGG++D+FP  +P P RI
Sbjct: 176  VEPLVFTVGEDLPLDEAAKR--LIENAYTRVELVMDRGEFAVRGGILDVFPPTAPHPVRI 233

Query: 192  DLFGNEIETIRAFDPDTQRSLYP-VKEVRLLPGREFPLDDAARTAFRGRWRELFEGDPSK 250
            + FG+EI+TI+ F    QR+    +K +     RE  L DA RT    R + L    P+ 
Sbjct: 234  EFFGDEIDTIKEFHASDQRTYGEGLKTIWATACRELQLTDAVRT----RAKALIGSIPNA 289

Query: 251  STIYKDIGNGVPSAGIEYYLPLFFESSATVFDYLPANSQLAFAGDVPDAIRRFWADTTQR 310
              + + I N +P  G+E  +P   +    V   LP ++ +  +   P+ +RR   D  + 
Sbjct: 290  EDMLESIANAIPVEGMESLMPALVDHLEPVGSMLPKHAVVLLSD--PEKLRRSAEDLAKT 347

Query: 311  YN-FMR---------HDRERPLLPPAALFLSEEQFFTGAKPLARLVLQGTATGDTVPLAE 360
             N F+          H    P+    A FL   +  +  +     V++ T+ G    LA 
Sbjct: 348  ANEFLAASWHVAASGHGAGAPISFDEASFLDYAETISSLEYSEHPVIRLTSFGVDTTLAG 407

Query: 361  SLPDVSVNRRAE---DPLVNLEAL--LLKKDRRVLMCADSAGRRETLLQLFGESGLRPQP 415
             +  +     AE   D     + +  LL     V + A +AG    L +    +G+    
Sbjct: 408  HV-QLDAQNPAEFRGDEAKASQGIDGLLDAGFHVTITAAAAGTLARLKRALNTTGI---- 462

Query: 416  IDDYAAFLAGDSHFSIVVAPLQSGFAVPSAQGIEPLAFVTEAELYA-GTARRTGRRKQEQ 474
                       + F  + +    GF   +A+    +A +TE +L    +A    +  + +
Sbjct: 463  -----------TTFDTIRSQAIDGFVDNAAK----IALLTERDLTGRSSAVAVAKTPKRR 507

Query: 475  ASAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVSLDLGQGEE----EFLHLDY---EKG 527
              A+D     L ELK GD VVH +HGIGR+  +    +G G      E+L ++Y   ++G
Sbjct: 508  RKAID-----LVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRG 562

Query: 528  S---KLYVPVHQLHVISRYSGADPDTAP-LHSLGSGQWDRAKRRAAQQIRDTAAELLNLY 583
            +   KL++P  QL  +S+Y GA+   AP L+ LG   W   K +A + + + A +L+ LY
Sbjct: 563  APADKLFIPTDQLDQVSKYIGAE---APKLNKLGGSDWAATKAKARKHVHEIADDLIKLY 619

Query: 584  ARRALRQGHAFELTPKDYEKFAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGF 643
            + R   +G AF       ++  ++F ++ET DQ   I  V +DM    PMDRL+CGDVGF
Sbjct: 620  SARQRAKGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPVPMDRLICGDVGF 679

Query: 644  GKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHFQNLSDRFAEWPVRIVELSRFKTKKEI 703
            GKTE+A+RAAF AV  GKQVA+L PTTLL +QH +  +DRF  +PV +  +SRF+T KEI
Sbjct: 680  GKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHQETFTDRFEGFPVNVAAMSRFQTTKEI 739

Query: 704  DGAIKQINDGTADIVIGTHKMLSDDVKFQRLGLVVIDEEHRFGVRQKEMLKTLRAEVDVL 763
            +  I+ + +GT D+VIGTHK+L+  +KF+ LGLV+IDEE RFGV  KE LK LR  VDVL
Sbjct: 740  NATIEGLENGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVL 799

Query: 764  TLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVVREAILRELKRGGQV 823
            +L+ATPIPRTL MA+ G+R+ S +AT P+ RL + T+V   ED  V  A+ REL RGGQV
Sbjct: 800  SLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAVRRELLRGGQV 859

Query: 824  YFLHNEVDTIENKRAKLAELVPEARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIE 883
            +++HN V  I +   K+  LVPE+R+ +AHG+M E++L++++RDF  R  ++L+CTTIIE
Sbjct: 860  FYVHNRVQDISSIADKIHTLVPESRVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIE 919

Query: 884  TGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSHHQAYAYMLVHDVEGLSKLAQRRLEA 943
            TG+D+  ANT+++  AD+FGL+QLHQLRGRVGR   +AYAY L    + +++ +  RL  
Sbjct: 920  TGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLAT 979

Query: 944  IQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKSLKAGKEP 1003
            I Q   LGSGF +AM DLE+RG G +LGD+QSG I  +GF LY  M++ AV+     KEP
Sbjct: 980  IAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEKY---KEP 1036

Query: 1004 DL-MAPLAVTTEINLGTPALLPSDYCTDVHERLSLYKRLANCEAAERVDDIQEELIDRFG 1062
            D  + P++V+  I+L   A +P DY      RL  Y++LA+      + D++EEL DR+G
Sbjct: 1037 DEDVEPVSVS--IDLPIEASIPIDYIDSDKLRLEAYRKLASARNEADLKDLKEELTDRYG 1094

Query: 1063 RLPPQAQALIETHRLRIAAVPLGVRKIDASDAAISMQFLPNPPIDAMKI 1111
            + P + + L +  RL+  A  LGV +I A    + +  +  P    M++
Sbjct: 1095 KPPVEFETLFDVARLKFKARKLGVSEILAQSNRVRIGRIDPPESIQMRM 1143