Pairwise Alignments

Query, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella sp. ANA-3

 Score = 1043 bits (2698), Expect = 0.0
 Identities = 564/1149 (49%), Positives = 758/1149 (65%), Gaps = 14/1149 (1%)

Query: 14   PLVKAG-QRYTVSGLPGSADALALAAYASQHRERVPMLAVVCANAVDAQRLAEEIPWFAP 72
            P+VK G Q  T+S L G   A+ LA+   QH+       +V ++   A  +  E+ +   
Sbjct: 10   PVVKNGTQMQTLSCLAGVGQAVTLASLVRQHKGTT---LIVTSDTPTALSIELELNYLLA 66

Query: 73   S--LRVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQGGQCDIMLVPAQTALYRLAPPA 130
               ++VRL PD ETLPYDSFSPHQDL+S+RL TL  I   +  +++VP  T + RL P +
Sbjct: 67   KSVIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITQAEHSVVIVPVTTLMMRLPPKS 126

Query: 131  FLAAYTFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPLPYR 190
            +L++  F  K+G+K     ++ Q T  GY  V  V   GE+++RG ++D+FP G  +P R
Sbjct: 127  YLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTGVNMPLR 186

Query: 191  IDLFGNEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRWRELFEGDPSK 250
            I+LF +E+ETIR FDP+TQRS  PV  VRLLP +EFP D +A   FR R+R  FE    +
Sbjct: 187  IELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEFPTDSSAIEGFRQRYRRRFEVIVKE 246

Query: 251  -STIYKDIGNGVPSAGIEYYLPLFFESSATVFDYLPANSQLAFAGDVPDAIRRFWADTTQ 309
              ++Y+ +   +  AGIE YLPLFF+  AT+FDYLP ++QL   GD+  + R    +   
Sbjct: 247  PESVYQLVSRNLMPAGIENYLPLFFDEVATLFDYLPKDTQLVTLGDIEKSARAHLQEVET 306

Query: 310  RYNFMRHDRERPLLPPAALFLSEEQFFTGAKPLAR---LVLQGTATGDTVPL-AESLPDV 365
            RY   R D  RPLL P  L+L  E+ F   KPL R   +  Q  A    V + A  LP+V
Sbjct: 307  RYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFIAPQPDAVAGAVQIDASVLPEV 366

Query: 366  SVNRRAEDPLVNLEALLLKKDRRVLMCADSAGRRETLLQLFGESGLRPQPIDDYAAFLAG 425
            S N + + PL+ L+    ++  R+L  A+S GRRE LL+L  +  L+P     +  F+  
Sbjct: 367  SANHKLKQPLIALQDYA-ERAPRMLFSAESEGRREALLELLSKIQLKPVLFSHFDEFIQS 425

Query: 426  DSHFSIVVAPLQSGFAVPSAQGIEPLAFVTEAELYAGTARRTGRRKQEQASAVDSMVRDL 485
            D+   ++V+PL  G  +   +    ++ + E EL+     +  RR++++  + D+++++L
Sbjct: 426  DAKLGLIVSPLSRGCLLGLGKQTA-VSIICETELFGHRISQQRRREKQRQISNDTLIKNL 484

Query: 486  AELKIGDPVVHSEHGIGRYQGLVSLDLGQGEEEFLHLDYEKGSKLYVPVHQLHVISRYSG 545
            AELK+G P+VH EHG+  YQGLV+LD G    E+L L+Y  G KLYVPV  LH+ISRYS 
Sbjct: 485  AELKVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYSGGDKLYVPVSNLHMISRYSV 544

Query: 546  ADPDTAPLHSLGSGQWDRAKRRAAQQIRDTAAELLNLYARRALRQGHAFELTPKDYEKFA 605
                 A L+ LG+  W +AK +A ++IRD AAELL++YARR  R G + ++  ++Y +FA
Sbjct: 545  GADGEAHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCDINDEEYAQFA 604

Query: 606  ESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAI 665
            + F FEET DQ +AI AV+ADM S   MDRLVCGDVGFGKTEVA+RAAFVAV  GKQV +
Sbjct: 605  QGFPFEETVDQESAIHAVLADMQSPVAMDRLVCGDVGFGKTEVAMRAAFVAVNAGKQVVV 664

Query: 666  LAPTTLLAEQHFQNLSDRFAEWPVRIVELSRFKTKKEIDGAIKQINDGTADIVIGTHKML 725
            L PTTLLA+QH++N  DRFA+WPV I  +SRF+T KE    +K + +G  DIVIGTHK+L
Sbjct: 665  LVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKLLEEGKVDIVIGTHKLL 724

Query: 726  SDDVKFQRLGLVVIDEEHRFGVRQKEMLKTLRAEVDVLTLTATPIPRTLGMALEGLRDFS 785
              + KF+ LGL++IDEEHRFGVRQKE +K LRA VD+LTLTATPIPRTL MA+ G+RD S
Sbjct: 725  QSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLS 784

Query: 786  VIATAPQKRLAIKTFVRREEDGVVREAILRELKRGGQVYFLHNEVDTIENKRAKLAELVP 845
            +IAT P KRLA+KTFVR  +   VREAILRE+ RGGQVY+LHN V+TIE     ++ L+P
Sbjct: 785  IIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQDISTLLP 844

Query: 846  EARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDVPTANTILIHRADKFGLA 905
            EAR+ VAHGQM ER+LERVM DF  +R N+L+CTTIIETGIDVP+ANTI+I RAD FGLA
Sbjct: 845  EARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERADTFGLA 904

Query: 906  QLHQLRGRVGRSHHQAYAYMLVHDVEGLSKLAQRRLEAIQQMEELGSGFYLAMHDLEIRG 965
            QLHQLRGRVGRSHHQAYAY++    + ++  A++RLEAI  +E+LG+GF LA  DLEIRG
Sbjct: 905  QLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRG 964

Query: 966  AGEVLGDKQSGEIHEIGFQLYTDMLNAAVKSLKAGKEPDLMAPLAVTTEINLGTPALLPS 1025
            AGE+LGD+QSG I +IGF LY +ML +AVK+LK GKEP L   L    E+ L  PALLP 
Sbjct: 965  AGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRIPALLPE 1024

Query: 1026 DYCTDVHERLSLYKRLANCEAAERVDDIQEELIDRFGRLPPQAQALIETHRLRIAAVPLG 1085
            DY  DV+ RLSLYKR+A+C++ E +D+++ ELIDRFG LP   + L+E    +  A  LG
Sbjct: 1025 DYVGDVNIRLSLYKRIASCDSEETLDELKVELIDRFGLLPEATKNLMEMTLYKHQATRLG 1084

Query: 1086 VRKIDASDAAISMQFLPNPPIDAMKIIDLVQKNRHI-KLAGQDKLRIEAKMPDVAVRAQT 1144
              KI+      S++F  +  ID   II L+Q    I ++ G +KL+          R   
Sbjct: 1085 ATKIEVHAKGGSIEFSDDHVIDPGFIIGLLQSQPQIYRMDGPNKLKFILNAETAKDRLAL 1144

Query: 1145 IKHTLRQLA 1153
            +K  L QL+
Sbjct: 1145 VKLLLEQLS 1153