Pairwise Alignments

Query, 565 a.a., single-stranded DNA exonuclease from Cupriavidus basilensis FW507-4G11

Subject, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

 Score =  488 bits (1255), Expect = e-142
 Identities = 268/559 (47%), Positives = 361/559 (64%), Gaps = 15/559 (2%)

Query: 22  LHPTLARILSARGVREPAELATELPGLAPPAAMKGIDHAATYLADAIAAGRRLLIVADYD 81
           + P L R+  +RGV   A+L      L     + GID A   L  AIA  +R+++V D+D
Sbjct: 19  IDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELLFAAIAEQKRIIVVGDFD 78

Query: 82  CDGATACAVGVRGLRMLGAR-IDYIVPNRFEYGYGLTPEIVALAARQQPDVIVTVDNGIA 140
            DGAT+ A+ V  LRMLG+R +DY+VPNRFE GYGL+PE+V  A  +  ++I+TVDNG++
Sbjct: 79  ADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVDNGVS 138

Query: 141 SVDGVAAANALGIDVVVTDHHLPGDQLPDAAVIVNPNQPGCEFPSKNLAGVGVMFYVLLA 200
           S++GV  A   G+ VVVTDHHLPG +LP+   +VNPN   C FPSK LAGVGV FY+++A
Sbjct: 139 SLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAFYLMMA 198

Query: 201 LRAELRRRGVFDAQ--TQPRLDTLLDLVALGTVADVVKLDSNNRILVAQGLKRMRAGRMH 258
           L   +R++G F AQ   +P+L  L+DLVALGTVADVV LD NNRILV QGL+R+RAG   
Sbjct: 199 LCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRAGLAR 258

Query: 259 AGVAALFRAAGREATRANTFDLGFGVGPRLNAAGRLADMSLGIECLLTDDANRAWEIAQE 318
            G+ AL   A R+A R    D GF +GPR+NAAGRL DMS G+E LL ++ + A  +A E
Sbjct: 259 PGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAARRMASE 318

Query: 319 LDGMNRERRDIEAGMQQEALQILEGPLGALDPAARFTVSVFNDTWHQGVIGIVASRLKEK 378
           LDG+N+ R++IE GM+QEA+   E    + D    + + +F   WHQGVIGI+ASR+KEK
Sbjct: 319 LDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILASRIKEK 378

Query: 379 YHRPTITFAPGDEDTIKGSGRSIPGFHLRDALDLVSKRHPGLLKKFGGHAMAAGLTLGAD 438
           YHRP I FA G +  +KGS RS+PG H+RDALD +  ++PG++ KFGGHAMAAGLT+   
Sbjct: 379 YHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLTIEEQ 438

Query: 439 SFGQFMEAFEAVGREWLSDEQLARVIETDGDIEDACFSPEFVSLLEQ-QVWGQGFPAPTF 497
           +F +F   F+ + RE L +  L  +I +DG+++   FS     LL     WGQ FP P F
Sbjct: 439 NFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAFPEPLF 498

Query: 498 CGEFDVLRQSVLKGKHLKLQLGRGSQRF------DAIWFN-----HADSLGASALVAYRL 546
            GEF VL Q ++  KHLKL L    + F      D I FN       D+   +  +AY+L
Sbjct: 499 DGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPDASVKTVRLAYKL 558

Query: 547 DNNTFNGITRVQMVIEHAQ 565
           D N F G   +Q++I+H +
Sbjct: 559 DINEFRGNQSLQLMIDHLE 577