Pairwise Alignments

Query, 565 a.a., single-stranded DNA exonuclease from Cupriavidus basilensis FW507-4G11

Subject, 580 a.a., single-stranded-DNA-specific exonuclease RecJ from Phaeobacter inhibens DSM 17395

 Score =  264 bits (675), Expect = 6e-75
 Identities = 208/559 (37%), Positives = 280/559 (50%), Gaps = 32/559 (5%)

Query: 22  LHPTLARILSARGV---REPAELATELPGLAP-PAAMKGIDHAATYLADAIAAGRRLLIV 77
           L   + ++L+ RGV        L  +L  L P P  MK ++ AA     A+    R+ + 
Sbjct: 35  LPAAVCQVLARRGVPSHEASGFLTPQLKELLPDPRRMKDMEPAAARFLQAVERCERIAVF 94

Query: 78  ADYDCDGATACAVGVRGLRMLGARIDYIVPNRFEYGYGLTPEIVALAARQQPDVIVTVDN 137
           ADYD DG ++ A+ +  L  +G      VP+R + GYG     +A  AR+  D+IV VD 
Sbjct: 95  ADYDVDGGSSAALLLVWLNQVGLSATLYVPDRIDEGYGPNDAAMAALAREH-DLIVCVDC 153

Query: 138 GIASVDGVAAANALGIDVVVTDHHLPGDQLPDAAVIVNPNQPGCEFPSKNLAGVGVMFYV 197
           G  S   +AAA   G DV+V DHHL G+ LPD   +VNPN+   +         GV+F +
Sbjct: 154 GTLSHGPIAAAK--GADVIVLDHHLGGETLPDCVAVVNPNRQDEDGDLGYFCAAGVVFLM 211

Query: 198 LLALRAELRRRGVFDAQTQPRLDTLLDLVALGTVADVVKLDSNNRILVAQGLKRMRAGRM 257
           L+ LR ++R +G+    T P L  LLDLVAL TVADV  L   NR LV QGLK M A R 
Sbjct: 212 LVELRRQMRDKGL---GTGPDLMALLDLVALATVADVAPLIEANRALVRQGLKVM-ATRQ 267

Query: 258 HAGVAALFRAAGREATRANTFDLGFGVGPRLNAAGRLADMSLGIECLLTDDANRAWEIAQ 317
             G+ AL   + R  +  +T+ LGF +GPR+NA GR+    LG   L T D   A  IA 
Sbjct: 268 RPGLVALADVS-RMDSAPSTYHLGFLLGPRVNAGGRIGKADLGARLLATSDPAEAEAIAA 326

Query: 318 ELDGMNRERRDIEAGMQQEALQILEGPLGALDPAARFTVSVFNDTWHQGVIGIVASRLKE 377
            LD +N ERRDIE  ++  AL+  E     LD      V    + WH GV+GIVASRLKE
Sbjct: 327 RLDELNTERRDIENAVRAAALEQAEA--RGLDAP---LVWAAGEGWHPGVVGIVASRLKE 381

Query: 378 KYHRPTITFAPGDEDTIKGSGRSIPGFHLRDALDLVSKRHPGLLKKFGGHAMAAGLTLGA 437
              RP I     D D  KGSGRS+ G  L  ++   +    GLL K GGH MAAGLT+  
Sbjct: 382 AAGRPAIVIGL-DGDEGKGSGRSVSGIDLGASIQRAAAE--GLLIKGGGHKMAAGLTVAR 438

Query: 438 DSFGQFMEAFEAVGREWLSDEQLARVIETDGDIEDACFSPEFVSLLEQQ-VWGQGFPAPT 496
           D     M     +  +  + +     ++ DG +     +   +  +EQ   +G G PAP 
Sbjct: 439 DQLEPAMARLSELLAKQGAGDLGPSDLKLDGMLMPGAATVPLIEQIEQAGPFGAGAPAPR 498

Query: 497 F-CGEFDVLRQSVLKGKHLKLQLGRG-SQRFDAIWFNHADSLGASALV---------AYR 545
           +   +  V     +   HLKL L  G S   DAI F   D+   S L+         A R
Sbjct: 499 YGFPDLQVRFAKRVGESHLKLSLSDGLSSGIDAICFGAFDTALGSRLLDHGGARFHFAGR 558

Query: 546 LDNNTFNGITRVQMVIEHA 564
           L+ NT+ G   VQ+ +E A
Sbjct: 559 LEINTWGGRQSVQLRLEDA 577