Pairwise Alignments

Query, 565 a.a., single-stranded DNA exonuclease from Cupriavidus basilensis FW507-4G11

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Shewanella loihica PV-4

 Score =  523 bits (1347), Expect = e-153
 Identities = 285/556 (51%), Positives = 377/556 (67%), Gaps = 15/556 (2%)

Query: 22  LHPTLARILSARGVR-EPAELATELPGLAPPAAMKGIDHAATYLADAIAAGRRLLIVADY 80
           L P L ++ ++RG   +  ELA  L  L  P  +K +D AA  +ADA+A  + +LI+ D+
Sbjct: 20  LSPILKQVYASRGCTVDDCELA--LANLLRPNTLKDVDKAAAIIADAMAKQQSILIIGDF 77

Query: 81  DCDGATACAVGVRGLRMLGA-RIDYIVPNRFEYGYGLTPEIVALAARQQPDVIVTVDNGI 139
           D DGAT+ +V +  LRM+GA  +DY++PNRF+YGYGL+PEIV +A ++  ++++TVDNGI
Sbjct: 78  DADGATSTSVCLLALRMMGAINVDYLIPNRFDYGYGLSPEIVQVAQQKGAELLITVDNGI 137

Query: 140 ASVDGVAAANALGIDVVVTDHHLPGDQLPDAAVIVNPNQPGCEFPSKNLAGVGVMFYVLL 199
           +S++GVAAA ALG+ VV+TDHHLPG+ +P+A  IVNPNQ GC F SK +AGVGV FY++ 
Sbjct: 138 SSIEGVAAAKALGMQVVITDHHLPGNSVPEADAIVNPNQLGCGFASKAIAGVGVAFYLMS 197

Query: 200 ALRAELRRRGVFDAQ--TQPRLDTLLDLVALGTVADVVKLDSNNRILVAQGLKRMRAGRM 257
           ALRAELR RG + AQ   +P L TLLD+VALGTVADVV LD+NNRILV  GLKR+RAGR 
Sbjct: 198 ALRAELRSRGWYQAQGIQEPNLATLLDIVALGTVADVVSLDTNNRILVDAGLKRVRAGRC 257

Query: 258 HAGVAALFRAAGREATRANTFDLGFGVGPRLNAAGRLADMSLGIECLLTDDANRAWEIAQ 317
             G+ AL   A R  +R    D GF VGPRLNAAGRL +M+LG+E LL DD  RA  +A 
Sbjct: 258 RPGITALLEVAKRNTSRIVASDFGFAVGPRLNAAGRLDEMALGVETLLCDDMMRARRMAS 317

Query: 318 ELDGMNRERRDIEAGMQQEALQILEGPLGALDPAARFTVSVFNDTWHQGVIGIVASRLKE 377
           ELDG+N ERR++E GMQQEAL+ LE  L   +    + ++++   WHQGVIGI+ASR+K+
Sbjct: 318 ELDGLNAERRELETGMQQEALKSLES-LSLNEAELPWGIALYQQDWHQGVIGILASRIKD 376

Query: 378 KYHRPTITFAPGDEDTIKGSGRSIPGFHLRDALDLVSKRHPGLLKKFGGHAMAAGLTLGA 437
           KYHRP I FA   E  IKGS RSI G H+RD L+L++ RHPG++ KFGGHAMAAGL+L A
Sbjct: 377 KYHRPVIAFAEAGEGEIKGSARSIKGLHMRDLLELINARHPGMIIKFGGHAMAAGLSLRA 436

Query: 438 DSFGQFMEAFEAVGREWLSDEQLARVIETDGDIEDACFSPEFV-SLLEQQVWGQGFPAPT 496
             F +F +A++   RE L+ EQL   I +DG++  A  +      L     WGQ FP P 
Sbjct: 437 GEFERFAKAYDEAVRELLAPEQLTGEIVSDGELSPAQLNMALARELRSAGPWGQNFPEPI 496

Query: 497 FCGEFDVLRQSVLKGKHLKLQLGR--GSQRFDAIWFN-----HADSLGASALVAYRLDNN 549
           F G F +L+Q ++  +HLKL L    G    DAI FN       D+    A VAY+LD N
Sbjct: 497 FDGVFRILQQRIVGERHLKLVLESECGQTMVDAIAFNVDLTTWPDATIQYAEVAYKLDIN 556

Query: 550 TFNGITRVQMVIEHAQ 565
            F G   +Q+++E  +
Sbjct: 557 EFRGNESLQLMVEQIE 572