Pairwise Alignments

Query, 565 a.a., single-stranded DNA exonuclease from Cupriavidus basilensis FW507-4G11

Subject, 571 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  268 bits (684), Expect = 6e-76
 Identities = 194/504 (38%), Positives = 263/504 (52%), Gaps = 30/504 (5%)

Query: 26  LARILSARGVREPAELAT----ELPGLAPPAAMKGIDHAATYLADAIAAGRRLLIVADYD 81
           + R+L  RGV    ++A      L  LAP A   G++ AA+ LAD + AG    +  DYD
Sbjct: 31  IVRLLWRRGVGSVDDMALYLSPNLRHLAPLAEWPGLEQAASTLADGLLAGLPFAVWGDYD 90

Query: 82  CDGATACAVGVRGLRMLGARIDYIVPNRFEYGYGLTPEIVALAARQQPDVIVTVDNGIAS 141
            DG T+ A+    L   G    + +P+R E GYGL    V   A Q   +++TVD GI+ 
Sbjct: 91  VDGVTSTALVKGVLAQHGMAAAHHIPDRREEGYGLNVAWVERLAEQGVRLLLTVDCGISD 150

Query: 142 VDGVAAANALGIDVVVTDHHLPGDQLPDAAVIVNPNQPGCEFPSKNLAGVGVMFYVLLAL 201
           V+ V  A  LG+ VVV+DHH+P + LPDA  I NP    C  P+  LAGVGV F V+ A+
Sbjct: 151 VEPVRRARELGMTVVVSDHHMPPEGLPDANAICNPRLAECPCPA--LAGVGVSFLVMAAV 208

Query: 202 RAELRRRGVFDAQTQPRLDTLLDLVALGTVADVVKLDSNNRILVAQGLKRMRAGRMHAGV 261
            A L  R       +  +   LDLVALGT+ADVV L   NRILV  GL ++   R   G+
Sbjct: 209 NAALAER----TGKKADMRDFLDLVALGTLADVVNLHGQNRILVKNGLLKIAEAR-RPGM 263

Query: 262 AALFRAAGREATRA-NTFDLGFGVGPRLNAAGRLADMSLGIECLLTDDANRAWEIAQELD 320
           AAL   +G   T A     + FG+ PR+NAAGR+    L ++ LLTDD   A  +AQELD
Sbjct: 264 AALKTVSGYNPTAAIGAGQVVFGLAPRINAAGRMGKAELALQLLLTDDHAEAARLAQELD 323

Query: 321 GMNRERRDIEAGMQQEALQILEGPLGALDPAARFTVSVFNDTWHQGVIGIVASRLKEKYH 380
             N  RR  E  +   A +  EG L       R  + +  D WH GVIGIVASR+ ++++
Sbjct: 324 AENARRRAEEDRILDAAKKQAEGQLD------RMGLVLHGDDWHPGVIGIVASRIVDEFY 377

Query: 381 RPTITFAPGDEDTIKGSGRSIPGFHLRDALDLVSKRHPGLLKKFGGHAMAAGLTLGADSF 440
           RPT+  +  D  ++KGSGRS+  F L   L     R   L   FGGH  AAG+++ A   
Sbjct: 378 RPTLILS-SDGQSMKGSGRSVAEFDLHAGL----TRCADLFTAFGGHHQAAGMSMPASHV 432

Query: 441 GQFMEAFEAVGREWLSDEQLARVIETDGDIEDACFSPEFVSLLE---QQVWGQGFPAPTF 497
               E F+AV R  L D  L   ++ DG++  A  + +F  L E    Q +G G   P F
Sbjct: 433 DTLRERFDAVVRAELGDTPLTPRLKLDGELGFA-LAGDFTLLKELEMLQPFGTGNAEPVF 491

Query: 498 CGEFDVLRQSVLKG---KHLKLQL 518
                ++R     G    H++LQL
Sbjct: 492 ASPPVLVRDLRRFGPTRDHVELQL 515