Pairwise Alignments

Query, 565 a.a., single-stranded DNA exonuclease from Cupriavidus basilensis FW507-4G11

Subject, 578 a.a., single-stranded-DNA-specific exonuclease RecJ from Pantoea sp. MT58

 Score =  490 bits (1261), Expect = e-143
 Identities = 270/555 (48%), Positives = 361/555 (65%), Gaps = 17/555 (3%)

Query: 22  LHPTLARILSARGVREPAELATELPGLAPPAAMKGIDHAATYLADAIAAGRRLLIVADYD 81
           L P L R+   RGVR+ AEL      L P  ++ GI+ A   L  A+  GRR+++V D+D
Sbjct: 23  LPPLLKRLYLQRGVRDAAELERGAKNLLPYQSLSGIESAVELLHQALLDGRRIMVVGDFD 82

Query: 82  CDGATACAVGVRGLRMLGA-RIDYIVPNRFEYGYGLTPEIVALAARQQPDVIVTVDNGIA 140
            DGAT+ A+ V  LR +G   + Y+VPNRFE GYGL+PE+V  A  +   +I+TVDNGI+
Sbjct: 83  ADGATSTALTVMALRSMGGGNVQYLVPNRFEDGYGLSPEVVEQARARGAAMILTVDNGIS 142

Query: 141 SVDGVAAANALGIDVVVTDHHLPGDQLPDAAVIVNPNQPGCEFPSKNLAGVGVMFYVLLA 200
           S  GV  A+  GI V++TDHHLPG+ LP A  IVNPN P C FPS+ LAGVGV FY++LA
Sbjct: 143 SHAGVDFAHQHGIPVLITDHHLPGETLPAAEAIVNPNLPDCNFPSRALAGVGVAFYLMLA 202

Query: 201 LRAELRRRGVFDA-QTQPRLDTLLDLVALGTVADVVKLDSNNRILVAQGLKRMRAGRMHA 259
           LRA LR +G F   +T+P L  +LDLVALGTVADVV LD NNRILV QGL R+RAG+   
Sbjct: 203 LRAHLRTQGWFGTTRTEPNLAEMLDLVALGTVADVVPLDVNNRILVWQGLSRIRAGKCRP 262

Query: 260 GVAALFRAAGREATRANTFDLGFGVGPRLNAAGRLADMSLGIECLLTDDANRAWEIAQEL 319
           G+ AL   A R+A +    DLGF +GPRLNAAGRL DMS+G+  L+TDD ++A  +A EL
Sbjct: 263 GIRALLEIANRDARQLAASDLGFALGPRLNAAGRLDDMSVGVALLMTDDLSQARMLASEL 322

Query: 320 DGMNRERRDIEAGMQQEALQILEGPLGALDPAAR---FTVSVFNDTWHQGVIGIVASRLK 376
           D +N+ R++IE GMQ EAL + +    AL+   R     ++ ++  WHQGV+GI+ASRLK
Sbjct: 323 DALNQTRKEIEQGMQSEALALCQ----ALEREQRDLPLGLAFYHPEWHQGVVGILASRLK 378

Query: 377 EKYHRPTITFAPGDEDTIKGSGRSIPGFHLRDALDLVSKRHPGLLKKFGGHAMAAGLTLG 436
           E++HRP I FAP  + T+KGSGRSI G HLRDAL+ +   +PG++ KFGGHAMAAGL+L 
Sbjct: 379 ERFHRPVIAFAPAGDGTLKGSGRSIAGLHLRDALERLDTLNPGMMLKFGGHAMAAGLSLE 438

Query: 437 ADSFGQFMEAFEAVGREWLSDEQLARVIETDGDIEDACFSPEFVSLL-EQQVWGQGFPAP 495
              + +F + F  +  EWL  E L  +I +DG ++   FS +   +L E   WGQ FP P
Sbjct: 439 TARYEEFRQRFADLVGEWLDGESLQGIIWSDGALQPQEFSLQTAEMLREAGPWGQAFPEP 498

Query: 496 TFCGEFDVLRQSVLKGKHLKLQLG--RGSQRFDAIWFN-----HADSLGASALVAYRLDN 548
            F G+F +L+Q ++  +HLK+ +    G    D I FN       DS      +AY+LD 
Sbjct: 499 AFDGKFKLLQQRLVGERHLKVMVEPLDGGPLIDGIAFNVDTTLWPDSSIRQVELAYKLDI 558

Query: 549 NTFNGITRVQMVIEH 563
           N + G   VQ++I+H
Sbjct: 559 NEYRGNRSVQLIIDH 573