Pairwise Alignments

Query, 565 a.a., single-stranded DNA exonuclease from Cupriavidus basilensis FW507-4G11

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  528 bits (1359), Expect = e-154
 Identities = 283/555 (50%), Positives = 376/555 (67%), Gaps = 13/555 (2%)

Query: 22  LHPTLARILSARGVREPAELATELPGLAPPAAMKGIDHAATYLADAIAAGRRLLIVADYD 81
           L P L ++ + RGV  P+E    L GL  P  MKG+D AA  +ADA+   + +LIV D+D
Sbjct: 20  LPPLLRQLYARRGVL-PSECELVLKGLLRPDTMKGLDLAAKLIADAMQLDKSILIVGDFD 78

Query: 82  CDGATACAVGVRGLRMLGA-RIDYIVPNRFEYGYGLTPEIVALAARQQPDVIVTVDNGIA 140
            DGAT+ +V +  LRM+GA ++DY++PNRF+YGYGL+PEIVA+AA +Q  +++TVDNGI+
Sbjct: 79  ADGATSTSVCILALRMMGASKVDYLIPNRFDYGYGLSPEIVAVAASKQAQLLITVDNGIS 138

Query: 141 SVDGVAAANALGIDVVVTDHHLPGDQLPDAAVIVNPNQPGCEFPSKNLAGVGVMFYVLLA 200
           S++GVAAA A G+ VV+TDHHLPG +LP A  IVNPNQPGC+F SK++AGVGV FY++ A
Sbjct: 139 SIEGVAAAKAFGMQVVITDHHLPGHELPKADAIVNPNQPGCQFASKSIAGVGVAFYLMTA 198

Query: 201 LRAELRRRGVFDAQ--TQPRLDTLLDLVALGTVADVVKLDSNNRILVAQGLKRMRAGRMH 258
           LRAELR R  + A+   +P L TLLD+VALGTVADVV LD+NNRILV  GL+R+R+GR  
Sbjct: 199 LRAELRARNWYQARGIAEPNLGTLLDIVALGTVADVVSLDTNNRILVEAGLQRVRSGRCR 258

Query: 259 AGVAALFRAAGREATRANTFDLGFGVGPRLNAAGRLADMSLGIECLLTDDANRAWEIAQE 318
            G+ AL   A R   R    D GF VGPRLNAAGRL +M+LG+E LL +D   A  +A E
Sbjct: 259 VGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVETLLCEDMMYARRMAAE 318

Query: 319 LDGMNRERRDIEAGMQQEALQILEGPLGALDPAARFTVSVFNDTWHQGVIGIVASRLKEK 378
           LD +N+ERR++E GMQQEAL+ LE  L   +    + +++F + WHQGVIGI+ASR+K+K
Sbjct: 319 LDSLNQERRELEVGMQQEALKSLE-YLKLNEEQLPWGIALFQEDWHQGVIGILASRIKDK 377

Query: 379 YHRPTITFAPGDEDTIKGSGRSIPGFHLRDALDLVSKRHPGLLKKFGGHAMAAGLTLGAD 438
           YHRP I FA      IKGS RSI G H+RD L+LV+ RHPGL+ KFGGHAMAAGLTL + 
Sbjct: 378 YHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLISKFGGHAMAAGLTLKSG 437

Query: 439 SFGQFMEAFEAVGREWLSDEQLARVIETDGDIEDACFSPEFVSLLEQQ-VWGQGFPAPTF 497
            F  F +A++   RE L  EQL   + +DG++     + E   LL     WGQ F  P F
Sbjct: 438 GFATFAKAYDDAVREQLKPEQLTGELWSDGELTPTELTLEIAQLLRNAGPWGQSFEEPLF 497

Query: 498 CGEFDVLRQSVLKGKHLKLQLGR--GSQRFDAIWFNHA-----DSLGASALVAYRLDNNT 550
            G F +++Q ++  +HLKL L    G+   DAI FN A     D+    A + Y+LD N 
Sbjct: 498 DGYFKIIQQRIVGDRHLKLVLETQCGTVMLDAIAFNVALHTWPDATIQHARIVYKLDVNE 557

Query: 551 FNGITRVQMVIEHAQ 565
           + G   +Q+++E  +
Sbjct: 558 YRGNFTLQLMVEQIE 572