Pairwise Alignments

Query, 565 a.a., single-stranded DNA exonuclease from Cupriavidus basilensis FW507-4G11

Subject, 585 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  259 bits (663), Expect = 2e-73
 Identities = 212/566 (37%), Positives = 288/566 (50%), Gaps = 45/566 (7%)

Query: 21  GLHPTLARILSARGVR-EPAE--LATELPGLAP-PAAMKGIDHAATYLADAIAAGRRLLI 76
           GL   + R L+ RGV  E AE  LA  L  L P P +++ ++ AA  +  AIA   R+ I
Sbjct: 38  GLPDAVCRTLARRGVAPEEAEDFLAPTLRALLPDPRSLRDMERAAARVNAAIARNERIAI 97

Query: 77  VADYDCDGATACAVGVRGLRMLGARIDYIVPNRFEYGYGLTPEIVALAARQQP-DVIVTV 135
            ADYD DG ++ A+ +  LR  G      VP+R + GYG  P I A+ A     D+I+ V
Sbjct: 98  FADYDVDGGSSAALLIDWLRAQGRTATLYVPDRIDEGYG--PNIPAMEALADAHDLIICV 155

Query: 136 DNGIASVDGVAAANALGIDVVVTDHHLPGDQLPDAAVIVNPNQPGCEFPSKNLAGVGVMF 195
           D G  S D VAAA   G DVV+ DHHL  + LP A  +VNPN+   +    +L    V+F
Sbjct: 156 DCGTLSHDPVAAAQ--GTDVVILDHHLAEECLPAAHAVVNPNRQDEDGSLSHLCAAAVVF 213

Query: 196 YVLLALRAELRRRGVFDAQTQPRLDTLLDLVALGTVADVVKLDSNNRILVAQGLKRMRAG 255
            +L+    + R  G    Q    L  LLDLVAL TVADV  L   NR  V QGL  M   
Sbjct: 214 LLLVEANRQQRAAG----QPGQDLMALLDLVALATVADVAPLSGVNRAFVRQGLTVM-GR 268

Query: 256 RMHAGVAALFRAAGREATRANTFDLGFGVGPRLNAAGRLADMSLGIECLLTDDANRAWEI 315
           R   G+ AL  +AG +    +++ LGF +GPR+NA GR+    LG   L T D + A  +
Sbjct: 269 RERPGLTALSDSAGLDRA-PSSYHLGFVLGPRINAGGRIGAADLGARLLATRDPHEAAAL 327

Query: 316 AQELDGMNRERRDIEAGMQQEALQILEGPLGALDPAARFTVSVFNDTWHQGVIGIVASRL 375
           A+ L+ +N ERRDIEA ++  AL+  E   G   P A        + WH GV+GIVASRL
Sbjct: 328 AERLEKLNAERRDIEAQVRASALEQAE-TRGLNAPLA----WAAGEGWHPGVVGIVASRL 382

Query: 376 KEKYHRPTITFA-PGDEDTIKGSGRSIPGFHLRDALDLVSKRHPGLLKKFGGHAMAAGLT 434
           KE  +RP I     GDE   KGSGRS+PG  L  A+  ++  H GLL K GGH MAAGLT
Sbjct: 383 KETANRPAIVIGLEGDEG--KGSGRSVPGIDLGAAIQRLA--HEGLLLKGGGHKMAAGLT 438

Query: 435 LGAD----SFGQFMEAFEAVGREWLSDEQLARVIETDGDIEDACFSPEFVSLLEQQ-VWG 489
           +  D    +  +  E   A G + L  + L      DG +     + E ++ +E    +G
Sbjct: 439 VRRDLLEPAMARLSELLAAQGADRLGPKGL----HVDGVLSPRAITTELITRIEDAGPFG 494

Query: 490 QGFPAPTFCGEFDVLRQSVLKGK-HLKLQL-GRGSQRFDAIWFNHADSLGASAL------ 541
              PAP F      +R +   G+ HL+    G    R D I F   D+    AL      
Sbjct: 495 ASAPAPRFALPSVTIRYAKPVGESHLRFSFAGPCGTRMDGIAFGAFDTPIGPALSQSARG 554

Query: 542 ---VAYRLDNNTFNGITRVQMVIEHA 564
              +A RL+ N++ G  + Q+ ++ A
Sbjct: 555 TFHLAGRLEINSWGGQHKAQLRLDDA 580