Pairwise Alignments

Query, 306 a.a., recombinase XerD from Cupriavidus basilensis FW507-4G11

Subject, 311 a.a., site-specific tyrosine recombinase XerD from Sinorhizobium meliloti 1021

 Score =  176 bits (445), Expect = 8e-49
 Identities = 124/304 (40%), Positives = 165/304 (54%), Gaps = 21/304 (6%)

Query: 14  ALVDRFCDALWLEDGLAQNTIDAYRRDLALLSRWLHASGTCALLAVDDTALNGYFASRHL 73
           A V+ F + +  E G A NT+ +Y RDL     +L + GT    A  D  L  Y +  HL
Sbjct: 7   AYVEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADD-LRSYLS--HL 63

Query: 74  AT---RASSANRRLTVFKRFFQWALREHMITADPCLLLRPAKQPPRFPKTLTEAQVEALL 130
           A    +ASS  RRL+  ++F+++   E + T DP  +L   K+    PKTL+   V  L+
Sbjct: 64  AGQGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLI 123

Query: 131 ETPDTATPLG-------LRDRTMLELMYASGLRVSELTQMKTIEISLNEGVARVVGGKGN 183
              +     G       LR   ++EL+YA+G+RVSEL  +    ++ N G   ++ GKGN
Sbjct: 124 GQAEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQN-GRFLIIRGKGN 182

Query: 184 KERLVPFGTEAGDWLRRYLAEGRPALLGERACEALFVTQRGEG--MTRQAFWHLIKRHAR 241
           KERLVP    A   +R Y      AL  E A         G+   + RQ F   +K  A 
Sbjct: 183 KERLVPLSQAAIRAMRAY----GEALQEESADSPWLFPSNGKSGHLPRQVFARDLKSLAA 238

Query: 242 EAEI-YAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQ 300
            A I  A +SPH LRHAFA+HLL +GADLR VQ LLGH+DISTTQIYTHV  ERL +L Q
Sbjct: 239 RAGIRVAAISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTHVLEERLHDLVQ 298

Query: 301 HHHP 304
           +HHP
Sbjct: 299 NHHP 302