Pairwise Alignments

Query, 306 a.a., recombinase XerD from Cupriavidus basilensis FW507-4G11

Subject, 294 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  234 bits (597), Expect = 2e-66
 Identities = 133/291 (45%), Positives = 174/291 (59%), Gaps = 5/291 (1%)

Query: 16  VDRFCDALWLEDGLAQNTIDAYRRDLALLSRWLHASGTCALLAVDDTALNGYFAS-RHLA 74
           +DR+ + L +E GLA+NT+ AY  DL  L  +L   G C L  VD+  L  +    R   
Sbjct: 1   MDRWLEHLLVERGLAENTLAAYSADLIELQVFLEERG-CLLAEVDEQTLFMHVVDLRRRG 59

Query: 75  TRASSANRRLTVFKRFFQWALREHMITADPCLLLRPAKQPPRFPKTLTEAQVEALLETPD 134
               +  R L   + FF +A+ E  + ADP L L   K     P  LT  ++  +L  PD
Sbjct: 60  MAGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPD 119

Query: 135 TATPLGLRDRTMLELMYASGLRVSELTQMKTIEISLNEGVARVVGGKGNKERLVPFGTEA 194
            +  LG RDRTMLELMYA+GLRVSEL  ++ ++     GV RV G KG KER+VP    +
Sbjct: 120 LSDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFG-KGAKERIVPVHHVS 178

Query: 195 GDWLRRYLAEGRPALLGERACEALFVTQRGEGMTRQAFWHLIKRHAREAEIYAPLSPHTL 254
              +  YL + RPA        A+F+ + G+G++RQA W ++KRH  EA I+  +SPHT 
Sbjct: 179 CALVTAYLRDWRPAFSPVEP--AMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHTF 236

Query: 255 RHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLRELHQHHHPR 305
           RH+FATHLL  GADLR VQLLLGHADIS T+IYTHV  +RLR +H  HHPR
Sbjct: 237 RHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPR 287