Pairwise Alignments

Query, 562 a.a., RNA helicase from Cupriavidus basilensis FW507-4G11

Subject, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

 Score =  459 bits (1182), Expect = e-134
 Identities = 245/448 (54%), Positives = 315/448 (70%), Gaps = 17/448 (3%)

Query: 1   MSFSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
           M F+ LGLS  +++A+ E+GY TP+PIQ QAIPA+L G D++A AQTGTGKTAGFTLP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  QLLSESSAGREPARGQRLPVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGIN 120
           +LL++    R         VRAL+LTPTRELAAQ++++V  YG++L L+S V+FGGV IN
Sbjct: 61  ELLAKGPKVRANQ------VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKIN 114

Query: 121 PQIEQLKRGVDIVVATPGRLLDHLSQRTIDLAHVEMLVLDEADRMLDMGFIHDIRKILNV 180
           PQ++++ +G DI+VATPGRL+D  +Q  +    +E+LVLDEADRMLDMGFI DI KIL +
Sbjct: 115 PQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKL 174

Query: 181 LPPKRQNLLFSATFSDEIRGLADRLLDNPASIEVARRNTTAETVAQRVYPVDRERKRELL 240
           LP KRQNLLFSATFS EIR LA  L++NP  I V+  N+TA TV Q +YP D ++K ++L
Sbjct: 175 LPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDML 234

Query: 241 AHLVRENDWHQVLVFTRTKHGANRLAEQLDKDGLSALAIHGNKSQSARTRALTEFKAGTL 300
             LV+E +W QVLVF RTKHGANRLA  L++ GL+A AIHGNKSQ ARTRAL +FKAG +
Sbjct: 235 VKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEV 294

Query: 301 RLLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEISL 360
           R+LVATDIAARGIDI QLP VVN++LP + EDYVHRIGRTGRAG  G+AISLV   E   
Sbjct: 295 RILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPE 354

Query: 361 MRDIERLIKRQIEQTILPGFEVDPSIPAEPI----------QKGRQARGQGQGNGG-GRG 409
           +  IERL +  + +  L GFE    +P   +          +K ++  G G+  G     
Sbjct: 355 LFAIERLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAEN 414

Query: 410 RGQAPAGGQPRGRAPAADAGERQQRPAR 437
           + +A   GQP G+A  A  G     P +
Sbjct: 415 KPKAGHRGQPTGQARTAKKGGTHSEPKK 442