Pairwise Alignments

Query, 562 a.a., RNA helicase from Cupriavidus basilensis FW507-4G11

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  498 bits (1283), Expect = e-145
 Identities = 281/539 (52%), Positives = 358/539 (66%), Gaps = 14/539 (2%)

Query: 1   MSFSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
           MSFS LGLS  L +AV+EQGY TP+PIQAQAIPA+L G D++A AQTGTGKTAGFTLPLL
Sbjct: 1   MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  QLLSESSAGREPARGQRLPVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGIN 120
           +LL++   G +   GQ    RALVLTPTRELAAQV ESV  YGKYL LRS V+FGGV IN
Sbjct: 61  ELLAK---GHKAKSGQ---TRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPIN 114

Query: 121 PQIEQLKRGVDIVVATPGRLLDHLSQRTIDLAHVEMLVLDEADRMLDMGFIHDIRKILNV 180
           PQI +L+ GVD++VATPGRLLD + Q  +    +E+LVLDEADRMLDMGFI DI+KIL +
Sbjct: 115 PQINKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILAL 174

Query: 181 LPPKRQNLLFSATFSDEIRGLADRLLDNPASIEVARRNTTAETVAQRVYPVDRERKRELL 240
           LP KRQNL+FSATFSDEIR LA  L+++P  I V  RN  A TV Q + PVD+ +K  LL
Sbjct: 175 LPAKRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALL 234

Query: 241 AHLVRENDWHQVLVFTRTKHGANRLAEQLDKDGLSALAIHGNKSQSARTRALTEFKAGTL 300
             L+++ +W QVLVF+RTKHGANRLA+ L +  +SA AIHGNKSQ ART+AL +FK+G +
Sbjct: 235 IQLIKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEV 294

Query: 301 RLLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEISL 360
           R+LVATDIAARG+DIDQLP VVN+DLPNVPEDYVHRIGRTGRAGA G+A+SLV  +EI L
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKL 354

Query: 361 MRDIERLIKRQIEQTILPGFEVDPSIPAEPIQ-KGRQARGQGQGN-GGGRGRGQ-APAGG 417
           ++DIERLI R +E+  + GF    ++P   +  +G+  + +   N    R  G+ AP  G
Sbjct: 355 LKDIERLINRVLERQEVEGFSPVHALPETTLNPQGKDTKVKAVANHRKHRSAGKPAPRSG 414

Query: 418 QPRGRAPAADAGERQQRPARAPQGRGQAPAAADGQGQRRAPQAPGQRPAQGSGRPASAGQ 477
             R      +  +RQ   +           AA      R+P+   + P +  G   SA  
Sbjct: 415 SGRDTQGNRENSQRQNSASSRNSNEHNNTEAA----VARSPKPKSKHPQRDGGTANSATA 470

Query: 478 GNPRNGQANGNRTGEANGNRA-AGNGNGNGNGNGNGNRDRNGDVNGNRAGVNTHAAQPR 535
           GN    + +      ++  R+   N +G       G   ++     N+   ++H A  R
Sbjct: 471 GNNAKAKPHSGAQQRSHAERSEKSNNDGRRQEQPKGRNPQSAKPASNQPKQHSHRADNR 529