Pairwise Alignments

Query, 562 a.a., RNA helicase from Cupriavidus basilensis FW507-4G11

Subject, 433 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  394 bits (1013), Expect = e-114
 Identities = 202/382 (52%), Positives = 273/382 (71%), Gaps = 5/382 (1%)

Query: 1   MSFSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60
           M F       +++RA+++ GY   TPIQ QAIPAI +G D+LA AQTGTGKTA F LP+L
Sbjct: 1   MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  QLLSESSAGREPARGQRLPVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGIN 120
           Q + E+     P+   +   R L+LTPTRELAAQV E+V  Y KYL    + ++GGV + 
Sbjct: 61  QKMVEN-----PSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVE 115

Query: 121 PQIEQLKRGVDIVVATPGRLLDHLSQRTIDLAHVEMLVLDEADRMLDMGFIHDIRKILNV 180
            Q ++LKRG DI+VATPGRLL+HL+   + L+ V+ LVLDEADRMLDMGF  DI+KIL  
Sbjct: 116 TQAQKLKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQA 175

Query: 181 LPPKRQNLLFSATFSDEIRGLADRLLDNPASIEVARRNTTAETVAQRVYPVDRERKRELL 240
           +  KRQNLLFSATFS  ++ LA+ ++  P  I   ++NTTA+TV+Q VYPV++ RKRELL
Sbjct: 176 VNKKRQNLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRELL 235

Query: 241 AHLVRENDWHQVLVFTRTKHGANRLAEQLDKDGLSALAIHGNKSQSARTRALTEFKAGTL 300
           + L+ + +W QVLVFT T+  A+ L ++L+ DG+ +  +HG K+Q +R RAL EF +G +
Sbjct: 236 SELIGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKV 295

Query: 301 RLLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEISL 360
           R+LVAT++AARG+DI  L +VVN+DLP + EDYVHRIGRTGRAG  G AIS V  +E   
Sbjct: 296 RVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERT 355

Query: 361 MRDIERLIKRQIEQTILPGFEV 382
           + DIE+LI ++I +  +PG+EV
Sbjct: 356 LADIEKLIGQKIRRITVPGYEV 377