Pairwise Alignments
Query, 1940 a.a., excinuclease ABC subunit A from Cupriavidus basilensis FW507-4G11
Subject, 1003 a.a., excinuclease ABC subunit A from Synechococcus elongatus PCC 7942
Score = 662 bits (1709), Expect = 0.0
Identities = 420/1027 (40%), Positives = 564/1027 (54%), Gaps = 111/1027 (10%)
Query: 6 IRIRGARQHNLKNLDLDLHTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
IR+RGARQHNL+NLDLDL ++ V TG SGSGKSSL FDT++AEGQRRYVE+ SAYARQ
Sbjct: 28 IRVRGARQHNLQNLDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYARQ 87
Query: 66 FLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAELF---- 121
FL ++D+P VD ++G+ PAI+IDQ + + RSTVGT+TE+ D+L+LL+ RA
Sbjct: 88 FLGQVDKPDVDAIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAGAPHCPHC 147
Query: 122 DRQTAQPVRHDSPETIYAELQARAAQGDPRLVVTFPVELPETTTDAEIEQWLSVSGYTRV 181
DR A P D AEL R+ R + PV + T ++ L+ G+ RV
Sbjct: 148 DRSIA-PQTIDQMVDRLAELPDRS-----RFQILAPVVRGKKGTHKKLLSSLAAEGFVRV 201
Query: 182 QAQRVVASPTGPRKV-------LDVVADRFRLGNTEKVRVLEAIEASLKRGSG------- 227
+ V + ++ +++V DR + R+++++ L+R G
Sbjct: 202 RINGEVRELSDSIELDKNHAHTIEIVVDRLVQKAGIQERLVDSLTTCLRRSEGIAVIDVL 261
Query: 228 ---RVNV-------YVTDAANEGA------QAQVWRFSTGLHSPESDIRYADPQPALFSF 271
R NV + + AA+ GA Q FS PE + P LFSF
Sbjct: 262 PGDRGNVITLPVEHHSSRAADTGAEYNREPQGYELVFSENFACPEHGAVMEELSPRLFSF 321
Query: 272 NSAYGACETCRGFGRVIGVDLGLVIPDERKTLRGGAIKPMQTPAWKECQDDLMRYAAKAG 331
NS YGAC C G G + LV+PD + AI P + L A +G
Sbjct: 322 NSPYGACSHCHGLGTLRTFSPELVVPDPNLPVYA-AIAPWSEKDHSYYFNLLCGVAEVSG 380
Query: 332 IPRDVAWSSLTPAERAWVIDGSPD-----WNGKW-NTHWYG---------VKRFFDYLES 376
W LTP ++ ++ GS + + ++ + H Y ++R + S
Sbjct: 381 FEISDRWQDLTPDQQHAILFGSSEPIAVETDSRFRDRHLYHRPFEGVIPILERQYRETSS 440
Query: 377 KAYKMHIRVLLSKYRSYTPCETCGGARLKTEALLWRLGSKPGADAVCAPQKRFAPRGVDW 436
+ YK L KY CE C G RLK E+L R+G D +
Sbjct: 441 EVYKQK----LEKYLVDQTCEVCHGLRLKPESLAVRMGPYRITDLTSVSVRECL------ 490
Query: 437 DRTQLEALPGLTVHDLMLMPIERIRKFFDELTLPSLMLDDALKLLLAEVRTRLKYLCDVG 496
++EAL G + +L T + + D L+L E++ RL++L DVG
Sbjct: 491 --NKIEALIGSDNREPLL-------------TARQMQIGD---LVLREIQARLRFLLDVG 532
Query: 497 LGYLTLDRQSRTLSGGEVQRINLTTALGTSLVKTLFVLDEPSIGLHPRDLNRIVEAMHRL 556
L YLTLDR + TLSGGE QRI L T +G L L+VLDEPSIGLH RD +R++ + RL
Sbjct: 533 LDYLTLDRPAMTLSGGEAQRIRLATQIGAGLTGVLYVLDEPSIGLHQRDNDRLLNTLIRL 592
Query: 557 RDAGNTLVVVEHDPSVMLAADRLIDMGPGPGERGGNIIFDGTPADI-RGSGTLTGEYLAG 615
RD GNTL+VVEHD + AAD L+D+GPG G GG I+ G + +LTG YL+G
Sbjct: 593 RDLGNTLIVVEHDEDTIRAADHLVDIGPGAGVHGGRIVAQGNLNQLLTAEESLTGAYLSG 652
Query: 616 HRQVTDLSRWTPRAVDAATPR-IVLEGASEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLL 674
R++ TP + A R ++L+GA+ +NL+++ VEIPL +LVC+TGVSGSGKSTL+
Sbjct: 653 RRRIA-----TPDSRRAGNGRRLLLQGANRNNLQNLDVEIPLGKLVCITGVSGSGKSTLI 707
Query: 675 QDVLYPAMARQFGKSTDAPGAFRSLTGAEQVADVVFVDQSPIGKTARSNPASYVGAFDEI 734
++L+PA+ G P L G + + V+ +DQSPIG+T RSNPA+Y GAFD I
Sbjct: 708 NELLHPALEHSLGLKVPFPKGLAVLKGTKAIDKVIVIDQSPIGRTPRSNPATYTGAFDPI 767
Query: 735 RKLFAKAPMALQRSYTAGMFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGRRY 794
R++FA A R Y G FSFN GRC CGG G +EM FL DVY++C C G RY
Sbjct: 768 RQVFAATTEAKARGYQPGQFSFNVKGGRCEACGGQGVNVIEMNFLPDVYVQCDVCKGARY 827
Query: 795 RAEILEVKIERALPGQPPRALSVADVLELTVSEAVAYFAGDAAVLRVLQPIVDVGLEYVK 854
E L+VK + ++ADVL +TV EA +F LQ +VDVGL YV+
Sbjct: 828 NRETLQVKY---------KGKTIADVLNMTVEEAAQFFENIPQASSRLQTLVDVGLGYVR 878
Query: 855 LGQPVPTLSGGEAQRLKLAGYLAETAQASNTRVKPMPYECKLFMFDEPTTGLHFDDIAKL 914
LGQP PTLSGGEAQR+KLA LA A L++ DEPTTGL F D+ KL
Sbjct: 879 LGQPAPTLSGGEAQRVKLATELARRATGKT-----------LYLIDEPTTGLSFYDVHKL 927
Query: 915 MRAFGKLLDGGHSLIVIEHNLDVVRAADWIIDLGPEGGDAGGEVLCVGTPEDVKRCAHSH 974
+ +L+D G+S++VIEHNLDV+R ADWIIDLGPEGGD GGE++ G PE V SH
Sbjct: 928 LDVMQRLVDKGNSIVVIEHNLDVIRCADWIIDLGPEGGDRGGEIVVCGEPEIVATHNQSH 987
Query: 975 TGKALLQ 981
TG+ L Q
Sbjct: 988 TGRYLAQ 994
Score = 507 bits (1306), Expect = e-147
Identities = 289/602 (48%), Positives = 372/602 (61%), Gaps = 62/602 (10%)
Query: 1347 VADTPCADCGGTRLNPVARAVTFDTHPIVAVAQWTVSDTHRWVQGLH--------LAGRE 1398
+ D C C G RL P + AV + I + +V + ++ L L R+
Sbjct: 451 LVDQTCEVCHGLRLKPESLAVRMGPYRITDLTSVSVRECLNKIEALIGSDNREPLLTARQ 510
Query: 1399 GEIARDVVSEIRSRLQFLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQGVCYVL 1458
+I V+ EI++RL+FL +VGL YL+LDR A +LSGGEAQRIRLA Q+G+ L GV YVL
Sbjct: 511 MQIGDLVLREIQARLRFLLDVGLDYLTLDRPAMTLSGGEAQRIRLATQIGAGLTGVLYVL 570
Query: 1459 DEPTIGLHPRDNQILLDALRKLGEKGNTLVVVEHDEDTIRCADHIIDIGPGAGKRGGTLV 1518
DEP+IGLH RDN LL+ L +L + GNTL+VVEHDEDTIR ADH++DIGPGAG GG +V
Sbjct: 571 DEPSIGLHQRDNDRLLNTLIRLRDLGNTLIVVEHDEDTIRAADHLVDIGPGAGVHGGRIV 630
Query: 1519 AQGGVAALSASADSLTGQFLAQPILHPLQPRREVTPAGKNNEAVPERWLTVHNATKHNLR 1578
AQG + L + +SLTG +L+ RR TP + A R L + A ++NL+
Sbjct: 631 AQGNLNQLLTAEESLTGAYLSGR-------RRIATPDSRR--AGNGRRLLLQGANRNNLQ 681
Query: 1579 NVTASIPLARLVAITGVSGSGKSTLARDVLMANLLDAVGRSVMSSPATRRARKAAGSEAP 1638
N+ IPL +LV ITGVSGSGKSTL ++L L ++G V
Sbjct: 682 NLDVEIPLGKLVCITGVSGSGKSTLINELLHPALEHSLGLKVPFP--------------- 726
Query: 1639 ARSQATARTEPRRKLEVTHNWQGCESITGYESIDRVLEVDQTPIGKTPRSCPATYIGVWD 1698
+G + G ++ID+V+ +DQ+PIG+TPRS PATY G +D
Sbjct: 727 ---------------------KGLAVLKGTKAIDKVIVIDQSPIGRTPRSNPATYTGAFD 765
Query: 1699 TIRKLFAQTLEAKARGYSASRFSFNTGDGRCPACEGQGVRTIGMSFLPDVKVHCDVCHGQ 1758
IR++FA T EAKARGY +FSFN GRC AC GQGV I M+FLPDV V CDVC G
Sbjct: 766 PIRQVFAATTEAKARGYQPGQFSFNVKGGRCEACGGQGVNVIEMNFLPDVYVQCDVCKGA 825
Query: 1759 RFNPETLAVTWRGKNIGDVLTMEIDEAVEFFSAMSNIAHPLQLMKDVGLGYLTLGQPSPT 1818
R+N ETL V ++GK I DVL M ++EA +FF + + LQ + DVGLGY+ LGQP+PT
Sbjct: 826 RYNRETLQVKYKGKTIADVLNMTVEEAAQFFENIPQASSRLQTLVDVGLGYVRLGQPAPT 885
Query: 1819 LSGGEAQRIKLVTELSKVRDDITRRGQQAPHTLYVLDEPTVGLHMADVAKLIRVLHRLAD 1878
LSGGEAQR+KL TEL++ + TLY++DEPT GL DV KL+ V+ RL D
Sbjct: 886 LSGGEAQRVKLATELAR---------RATGKTLYLIDEPTTGLSFYDVHKLLDVMQRLVD 936
Query: 1879 GGHSVVVIEHDLDVIAEADWILDLGPEGGVAGGGIVAATDPEGLVRVRASHTGAALAPVL 1938
G+S+VVIEH+LDVI ADWI+DLGPEGG GG IV +PE + SHTG LA VL
Sbjct: 937 KGNSIVVIEHNLDVIRCADWIIDLGPEGGDRGGEIVVCGEPEIVATHNQSHTGRYLAQVL 996
Query: 1939 AR 1940
A+
Sbjct: 997 AQ 998
Score = 187 bits (476), Expect = 5e-51
Identities = 112/318 (35%), Positives = 166/318 (52%), Gaps = 23/318 (7%)
Query: 1016 DVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESLNAYA 1075
D +R+ A +HNL+ L++D+P + V TGVSGSGKS+LAFD +F EGQRRY+ESL+AYA
Sbjct: 26 DQIRVRGARQHNLQNLDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYA 85
Query: 1076 RSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLMYVKLGIQHCI 1135
R + +P+VDA+ G+ P ++I+Q+ + +STV T +E++ +LRL++ + G HC
Sbjct: 86 RQFLGQVDKPDVDAIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAGAPHCP 145
Query: 1136 HDGTPVTSQSPESIAAQLLRDYKGQHVGLLAPLVVSRKGVYTDLAKWAKARGNTHLRVDG 1195
H + Q+ + + +L +LAP+V +KG + L A G +R++G
Sbjct: 146 HCDRSIAPQTIDQMVDRLAELPDRSRFQILAPVVRGKKGTHKKLLSSLAAEGFVRVRING 205
Query: 1196 EFLPVDPWPRLDRFREHTIELPVGDIIVSADNEAALRALLGQALEAGKGVMHLLAPLDGL 1255
E + LD+ HTIE+ V ++ A + L L L +G+ A +D L
Sbjct: 206 EVRELSDSIELDKNHAHTIEIVVDRLVQKAGIQERLVDSLTTCLRRSEGI----AVIDVL 261
Query: 1256 QHAMGNGGTARV-------------------GSTTVFSTKRACPVCSTSYPELDPRLFSY 1296
GN T V G VFS ACP EL PRLFS+
Sbjct: 262 PGDRGNVITLPVEHHSSRAADTGAEYNREPQGYELVFSENFACPEHGAVMEELSPRLFSF 321
Query: 1297 NSKHGWCTSCVGTGLTLT 1314
NS +G C+ C G G T
Sbjct: 322 NSPYGACSHCHGLGTLRT 339
Score = 137 bits (346), Expect = 6e-36
Identities = 93/257 (36%), Positives = 127/257 (49%), Gaps = 42/257 (16%)
Query: 1291 PRLFSYNSKHGWCTSCVGTGLTLTREQRAAYDDTVMADDNRGREQTLPSEQQEPDDVADT 1350
P FS+N K G C +C G G+ + E DV
Sbjct: 784 PGQFSFNVKGGRCEACGGQGVNVI-------------------------EMNFLPDVY-V 817
Query: 1351 PCADCGGTRLNPVARAVTFDTHPIVAVAQWTVSDTHRWVQGLHLAGREGEIARDVVSEIR 1410
C C G R N V + I V TV + ++ + + A
Sbjct: 818 QCDVCKGARYNRETLQVKYKGKTIADVLNMTVEEAAQFFENIPQAS-------------- 863
Query: 1411 SRLQFLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQG-VCYVLDEPTIGLHPRD 1469
SRLQ L +VGLGY+ L + AP+LSGGEAQR++LA +L G Y++DEPT GL D
Sbjct: 864 SRLQTLVDVGLGYVRLGQPAPTLSGGEAQRVKLATELARRATGKTLYLIDEPTTGLSFYD 923
Query: 1470 NQILLDALRKLGEKGNTLVVVEHDEDTIRCADHIIDIGPGAGKRGGTLVAQGGVAALSAS 1529
LLD +++L +KGN++VV+EH+ D IRCAD IID+GP G RGG +V G ++
Sbjct: 924 VHKLLDVMQRLVDKGNSIVVIEHNLDVIRCADWIIDLGPEGGDRGGEIVVCGEPEIVATH 983
Query: 1530 ADSLTGQFLAQPIL-HP 1545
S TG++LAQ + HP
Sbjct: 984 NQSHTGRYLAQVLAQHP 1000
Score = 125 bits (313), Expect = 4e-32
Identities = 84/226 (37%), Positives = 124/226 (54%), Gaps = 35/226 (15%)
Query: 838 VLRVLQP----IVDVGLEYVKLGQPVPTLSGGEAQRLKLAGYLAETAQASNTRVKPMPYE 893
VLR +Q ++DVGL+Y+ L +P TLSGGEAQR++LA + A T V
Sbjct: 517 VLREIQARLRFLLDVGLDYLTLDRPAMTLSGGEAQRIRLATQIG----AGLTGV------ 566
Query: 894 CKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLDVVRAADWIIDLGPEGGD 953
L++ DEP+ GLH D +L+ +L D G++LIV+EH+ D +RAAD ++D+GP G
Sbjct: 567 --LYVLDEPSIGLHQRDNDRLLNTLIRLRDLGNTLIVVEHDEDTIRAADHLVDIGPGAGV 624
Query: 954 AGGEVLCVGTPEDVKRCAHSHTGKALLQYDRAVGHAFVAQDAGVPLQAALRAARARRAIE 1013
GG ++ G + S TG A+++ + + RA RR +
Sbjct: 625 HGGRIVAQGNLNQLLTAEESLTG------------AYLSGRRRIATPDSRRAGNGRRLL- 671
Query: 1014 GEDVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDIL 1059
+ A+ +NL+ L+V+IP GK ITGVSGSGKSTL ++L
Sbjct: 672 ------LQGANRNNLQNLDVEIPLGKLVCITGVSGSGKSTLINELL 711
Score = 62.4 bits (150), Expect = 3e-13
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Query: 632 AATPRIVLEGASEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLLQDVLY-----------P 680
A T +I + GA +HNL+++ +++P +L+ TGVSGSGKS+L D ++
Sbjct: 23 AETDQIRVRGARQHNLQNLDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLS 82
Query: 681 AMARQFGKSTDAPGAFRSLTGAEQVADVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAK 740
A ARQF D P + E ++ + +DQ RS + +D +R LF +
Sbjct: 83 AYARQFLGQVDKP----DVDAIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGR 138
Query: 741 A 741
A
Sbjct: 139 A 139
Score = 52.0 bits (123), Expect = 4e-10
Identities = 39/161 (24%), Positives = 63/161 (39%), Gaps = 29/161 (18%)
Query: 1546 LQPRREVTPAGKNNEAVPERWLTVHNATKHNLRNVTASIPLARLVAITGVSGSGKSTLAR 1605
++P ++ + A + V A +HNL+N+ +P +L+ TGVSGSGKS+LA
Sbjct: 7 VEPSSDLAHRNGDRPAAETDQIRVRGARQHNLQNLDLDLPRNQLIVFTGVSGSGKSSLAF 66
Query: 1606 DVLMANLLDAVGRSVMSSPATRRARKAAGSEAPARSQATARTEPRRKLEVTHNWQGCESI 1665
D + A + R A AR +P +
Sbjct: 67 DTIFAE---------------GQRRYVESLSAYARQFLGQVDKP--------------DV 97
Query: 1666 TGYESIDRVLEVDQTPIGKTPRSCPATYIGVWDTIRKLFAQ 1706
E + + +DQ PRS T ++D +R LF +
Sbjct: 98 DAIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGR 138