Pairwise Alignments
Query, 1940 a.a., excinuclease ABC subunit A from Cupriavidus basilensis FW507-4G11
Subject, 954 a.a., excinuclease ABC subunit UvrA from Ralstonia sp. UNC404CL21Col
Score = 638 bits (1645), Expect = 0.0
Identities = 396/1013 (39%), Positives = 554/1013 (54%), Gaps = 108/1013 (10%)
Query: 6 IRIRGARQHNLKNLDLDLHTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 65
I+IRGAR HNLKN++LDL ++ V+TG SGSGKSSL FDTLYAEGQRRYVE+ SAYARQ
Sbjct: 4 IKIRGARTHNLKNINLDLPRNQLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
Query: 66 FLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAELFDRQT 125
FL M++P VD ++G+ PAI+I+Q + RSTVGT+TE++D+L+LLYARA +
Sbjct: 64 FLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPDH 123
Query: 126 AQPVRHDSPETIYAELQARAAQGDPRLVVTFPVELPETTTDAEIEQWLSVSGYTRV---- 181
QP+ S + + A A D +L++ PV ++ + + G+ R
Sbjct: 124 GQPLEAQSVSQMVDAVLALPA--DTKLMILAPVVANRKGEHVDLFEAMQAQGFVRFRIRS 181
Query: 182 -------------QAQRVVASPTGPRKVLDVVADRFRLGNTEKVRVLEAIEASLKRGSGR 228
+ + + ++VV DR ++ K R+ E+ E +L+ GR
Sbjct: 182 GGGTAHEAEAKVYEVDNLPKLKKNDKHSIEVVVDRVKVNPELKQRLAESFETALRLADGR 241
Query: 229 VNVYVTDAANEGAQAQVWRFSTGLHSPESDIRYADPQPALFSFNSAYGACETCRGFGRVI 288
D E FS+ P + +P LFSFN+ GAC C G G++
Sbjct: 242 AIALEMDTGKEHG------FSSKFACPICSYSLQELEPRLFSFNNPMGACPHCDGLGQIT 295
Query: 289 GVDLGLVIPDERKTLRGGAIKPMQTPAWKECQDDLMRYAAKAGIPRDVAWSSLTPAERAW 348
D V+ +L GAIK Q L AA + DVA+ L +
Sbjct: 296 FFDPKRVVAFPNLSLASGAIKGWDRRNQFYFQM-LQSLAAFYDVDIDVAFEDLPAEIQQI 354
Query: 349 VIDGSP---------DWNGKWNTHWYGVKRFFDYLESKAYK----MHIRVLLSKYRSYTP 395
V+ GS + GK + + LE + YK + +R L+KY++ P
Sbjct: 355 VLHGSGKQQIPFTYINERGKTTVREHAFEGIIPNLERR-YKETDSIAVREELAKYQNNQP 413
Query: 396 CETCGGARLKTEALLWRLGSKPGADAVCAPQKRFAPRGVDWDRTQLEALPGLTVHDLMLM 455
C C G RL+ EA ++G A RG+ +++
Sbjct: 414 CPECHGTRLRREARFVKIGEADQA------------RGI---------------YEINGW 446
Query: 456 PIERIRKFFDELTLPSLMLDDALKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGGEVQ 515
P+ +F L + + A K++ E+ RL +L +VGL YL+L+R + TLSGGE Q
Sbjct: 447 PLRDALTYFLTLNMHGAKREIADKIV-KEITARLNFLNNVGLDYLSLERSADTLSGGEAQ 505
Query: 516 RINLTTALGTSLVKTLFVLDEPSIGLHPRDLNRIVEAMHRLRDAGNTLVVVEHDPSVMLA 575
RI L + +G+ L ++VLDEPSIGLH RD +R++ + LRD GN+++VVEHD ++ A
Sbjct: 506 RIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDLGNSVLVVEHDEDMIRA 565
Query: 576 ADRLIDMGPGPGERGGNIIFDGTPADIRGS-GTLTGEYLAGHRQVT--------DLSRWT 626
+D ++D+GPG G GG II +GTP + S +LTG+YL+G R++ D RW
Sbjct: 566 SDYVVDIGPGAGVHGGQIIAEGTPKQVEQSPASLTGDYLSGKRRIEVPKQRTAPDEERWL 625
Query: 627 PRAVDAATPRIVLEGASEHNLRDVTVEIPLQRLVCVTGVSGSGKSTLLQDVLYPAMARQF 686
RI+ AS +NL++V+ +IP+ L C+TGVSGSGKSTL+ D LY A+AR
Sbjct: 626 ---------RII--NASGNNLKNVSADIPIGLLTCITGVSGSGKSTLINDTLYHAVARHL 674
Query: 687 GKSTDAPGAFRSLTGAEQVADVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAKAPMALQ 746
ST P A + G E V+ VDQSPIG+T RSNPA+Y G F IR+LFA P A +
Sbjct: 675 YGSTPEPAAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAGVPSAKE 734
Query: 747 RSYTAGMFSFNSGDGRCPTCGGSGFEHVEMQFLSDVYLRCPDCDGRRYRAEILEVKIERA 806
R Y G FSFN GRC C G G VEM FL DVY+ C C G+RY E LEV
Sbjct: 735 RGYDPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDVCHGKRYNRETLEVLY--- 791
Query: 807 LPGQPPRALSVADVLELTVSEAVAYFAGDAAVLRVLQPIVDVGLEYVKLGQPVPTLSGGE 866
+ ++ +VLE+TV +A +FA V R LQ ++DVGL Y++LGQ TLSGGE
Sbjct: 792 ------KGKNITEVLEMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRLGQSATTLSGGE 845
Query: 867 AQRLKLAGYLAETAQASNTRVKPMPYECKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGH 926
AQR+KL+ E ++ R L++ DEPTTGLHF DI L++ KL D G+
Sbjct: 846 AQRVKLS---LELSKRDTGRT--------LYILDEPTTGLHFHDIELLLKVIYKLRDHGN 894
Query: 927 SLIVIEHNLDVVRAADWIIDLGPEGGDAGGEVLCVGTPEDVKRCAHSHTGKAL 979
++++IEHNLDV++ ADW++DLGPEGG GG+++ GTPEDV + S TGK L
Sbjct: 895 TIVIIEHNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEDVAKSKASFTGKYL 947
Score = 512 bits (1318), Expect = e-148
Identities = 281/594 (47%), Positives = 366/594 (61%), Gaps = 57/594 (9%)
Query: 1351 PCADCGGTRLNPVARAVTF----DTHPIVAVAQWTVSDTHRWVQGLHLAGREGEIARDVV 1406
PC +C GTRL AR V I + W + D + L++ G + EIA +V
Sbjct: 413 PCPECHGTRLRREARFVKIGEADQARGIYEINGWPLRDALTYFLTLNMHGAKREIADKIV 472
Query: 1407 SEIRSRLQFLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQGVCYVLDEPTIGLH 1466
EI +RL FL VGL YLSL+R+A +LSGGEAQRIRLA+Q+GS L GV YVLDEP+IGLH
Sbjct: 473 KEITARLNFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLH 532
Query: 1467 PRDNQILLDALRKLGEKGNTLVVVEHDEDTIRCADHIIDIGPGAGKRGGTLVAQGGVAAL 1526
RDN L+ L+ L + GN+++VVEHDED IR +D+++DIGPGAG GG ++A+G +
Sbjct: 533 QRDNDRLIGTLKHLRDLGNSVLVVEHDEDMIRASDYVVDIGPGAGVHGGQIIAEGTPKQV 592
Query: 1527 SASADSLTGQFLAQPILHPLQPRREVTPAGKNNEAVPERWLTVHNATKHNLRNVTASIPL 1586
S SLTG +L+ +R + + ERWL + NA+ +NL+NV+A IP+
Sbjct: 593 EQSPASLTGDYLSG--------KRRIEVPKQRTAPDEERWLRIINASGNNLKNVSADIPI 644
Query: 1587 ARLVAITGVSGSGKSTLARDVLMANLLDAVGRSVMSSPATRRARKAAGSEAPARSQATAR 1646
L ITGVSGSGKSTL D L AV R + S A
Sbjct: 645 GLLTCITGVSGSGKSTLINDTLY----HAVARHLYGSTPEPAAH---------------- 684
Query: 1647 TEPRRKLEVTHNWQGCESITGYESIDRVLEVDQTPIGKTPRSCPATYIGVWDTIRKLFAQ 1706
+ I G E D+V+ VDQ+PIG+TPRS PATY G++ IR+LFA
Sbjct: 685 ----------------DRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFAG 728
Query: 1707 TLEAKARGYSASRFSFNTGDGRCPACEGQGVRTIGMSFLPDVKVHCDVCHGQRFNPETLA 1766
AK RGY RFSFN GRC AC+G GV + M FLPDV V CDVCHG+R+N ETL
Sbjct: 729 VPSAKERGYDPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDVCHGKRYNRETLE 788
Query: 1767 VTWRGKNIGDVLTMEIDEAVEFFSAMSNIAHPLQLMKDVGLGYLTLGQPSPTLSGGEAQR 1826
V ++GKNI +VL M +++A EFF+ + + LQ + DVGLGY+ LGQ + TLSGGEAQR
Sbjct: 789 VLYKGKNITEVLEMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRLGQSATTLSGGEAQR 848
Query: 1827 IKLVTELSKVRDDITRRGQQAPHTLYVLDEPTVGLHMADVAKLIRVLHRLADGGHSVVVI 1886
+KL ELSK + TLY+LDEPT GLH D+ L++V+++L D G+++V+I
Sbjct: 849 VKLSLELSK---------RDTGRTLYILDEPTTGLHFHDIELLLKVIYKLRDHGNTIVII 899
Query: 1887 EHDLDVIAEADWILDLGPEGGVAGGGIVAATDPEGLVRVRASHTGAALAPVLAR 1940
EH+LDVI ADW+LDLGPEGG GG I+A PE + + +AS TG LAP+L R
Sbjct: 900 EHNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEDVAKSKASFTGKYLAPLLKR 953
Score = 197 bits (501), Expect = 6e-54
Identities = 113/305 (37%), Positives = 170/305 (55%), Gaps = 24/305 (7%)
Query: 1016 DVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESLNAYA 1075
D ++I A HNLK +N+D+P + VITG+SGSGKS+LAFD L+ EGQRRY+ESL+AYA
Sbjct: 2 DEIKIRGARTHNLKNINLDLPRNQLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
Query: 1076 RSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLMYVKLGIQHCI 1135
R +Q +P+VD + G+ P ++IEQ+ + +STV T +E+ +LRL+Y + G +C
Sbjct: 62 RQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCP 121
Query: 1136 HDGTPVTSQSPESIAAQLLRDYKGQHVGLLAPLVVSRKGVYTDLAKWAKARGNTHLRV-- 1193
G P+ +QS + +L + +LAP+V +RKG + DL + +A+G R+
Sbjct: 122 DHGQPLEAQSVSQMVDAVLALPADTKLMILAPVVANRKGEHVDLFEAMQAQGFVRFRIRS 181
Query: 1194 --------DGEFLPVDPWPRLDRFREHTIELPVGDIIVSADNEAALRALLGQALEAGKGV 1245
+ + VD P+L + +H+IE+ V + V+ + + L AL G
Sbjct: 182 GGGTAHEAEAKVYEVDNLPKLKKNDKHSIEVVVDRVKVNPELKQRLAESFETALRLADGR 241
Query: 1246 MHLLAPLDGLQHAMGNGGTARVGSTTVFSTKRACPVCSTSYPELDPRLFSYNSKHGWCTS 1305
L G +H FS+K ACP+CS S EL+PRLFS+N+ G C
Sbjct: 242 AIALEMDTGKEHG--------------FSSKFACPICSYSLQELEPRLFSFNNPMGACPH 287
Query: 1306 CVGTG 1310
C G G
Sbjct: 288 CDGLG 292
Score = 149 bits (376), Expect = 2e-39
Identities = 107/355 (30%), Positives = 171/355 (48%), Gaps = 56/355 (15%)
Query: 786 CPDCDGRRYRAEILEVKIERALPGQPPRALSVADVLELTVSEAVAYFA-----------G 834
CP+C G R R E VKI G+ +A + ++ + +A+ YF
Sbjct: 414 CPECHGTRLRREARFVKI-----GEADQARGIYEINGWPLRDALTYFLTLNMHGAKREIA 468
Query: 835 DAAVLRV---LQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGYLAETAQASNTRVKPMP 891
D V + L + +VGL+Y+ L + TLSGGEAQR++LA +
Sbjct: 469 DKIVKEITARLNFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGV-------- 520
Query: 892 YECKLFMFDEPTTGLHFDDIAKLMRAFGKLLDGGHSLIVIEHNLDVVRAADWIIDLGPEG 951
+++ DEP+ GLH D +L+ L D G+S++V+EH+ D++RA+D+++D+GP
Sbjct: 521 ----MYVLDEPSIGLHQRDNDRLIGTLKHLRDLGNSVLVVEHDEDMIRASDYVVDIGPGA 576
Query: 952 GDAGGEVLCVGTPEDVKRCAHSHTGKALLQYDRAVGHAFVAQDAGVPLQAALRAARARRA 1011
G GG+++ GTP+ V++ S TG L R + + R A
Sbjct: 577 GVHGGQIIAEGTPKQVEQSPASLTGDYLSGKRR------------------IEVPKQRTA 618
Query: 1012 IEGEDVVRIVNAHEHNLKALNVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESL 1071
+ E +RI+NA +NLK ++ DIP G ITGVSGSGKSTL D L+H R
Sbjct: 619 PDEERWLRIINASGNNLKNVSADIPIGLLTCITGVSGSGKSTLINDTLYHAVARHLY--- 675
Query: 1072 NAYARSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLMY 1126
S +PA +D + + ++Q +S AT + ++ +R ++
Sbjct: 676 ----GSTPEPAAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFTPIRELF 726
Score = 48.5 bits (114), Expect = 4e-09
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 29/140 (20%)
Query: 1567 LTVHNATKHNLRNVTASIPLARLVAITGVSGSGKSTLARDVLMANLLDAVGRSVMSSPAT 1626
+ + A HNL+N+ +P +L+ ITG+SGSGKS+LA D L A
Sbjct: 4 IKIRGARTHNLKNINLDLPRNQLIVITGLSGSGKSSLAFDTLYAE--------------- 48
Query: 1627 RRARKAAGSEAPARSQATARTEPRRKLEVTHNWQGCESITGYESIDRVLEVDQTPIGKTP 1686
+ R A AR +P + E + + ++Q P
Sbjct: 49 GQRRYVESLSAYARQFLQLMEKP--------------DVDLIEGLSPAISIEQKATSHNP 94
Query: 1687 RSCPATYIGVWDTIRKLFAQ 1706
RS T + D +R L+A+
Sbjct: 95 RSTVGTVTEIHDYLRLLYAR 114