Pairwise Alignments

Query, 373 a.a., ABC transporter permease from Cupriavidus basilensis FW507-4G11

Subject, 261 a.a., conserved hypothetical protein TIGR00056 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  110 bits (275), Expect = 4e-29
 Identities = 70/209 (33%), Positives = 114/209 (54%), Gaps = 1/209 (0%)

Query: 160 IYNVGYKALGITALVGFLIGIVLSYLSANQLRTFGASIFIVNILGMAVIRELGPVLAAIL 219
           IY VG +++ I  + G  IG+VL+    N L  FG    +  ++ ++++RELGPV+ A+L
Sbjct: 49  IYVVGVQSMVIIVVSGLFIGMVLALQGYNILVGFGTEESLGPMVALSLLRELGPVVTALL 108

Query: 220 IAGRSGSAITAQIGVMRVTEELDAMRVMGISHGFRLIMPRVIALAIAMPLLVAWTDVLAL 279
            AGR+GSA+TA+IG+M+ TE+L ++ +M I    ++I PR  A  I+MPLL      + +
Sbjct: 109 FAGRAGSALTAEIGLMKSTEQLSSLEMMAIDPLRQIIAPRFWAGVISMPLLALMFTAVGI 168

Query: 280 TGGMLAAHLQLDISAAFFLRALPDAVP-VANLWMGLGKGVVFGILIALTACHFGLRIEPN 338
            GG L       I +  F   L  +V    ++   L K  VF +++   A + G ++ PN
Sbjct: 169 YGGHLVGVEWKGIDSGAFWSILQASVEWRQDIVNCLIKSGVFAVVVTWIALYRGYQVIPN 228

Query: 339 TRSLGEGTTASVVTSITVVIVADAIFAIL 367
              +   TT++VV S   V+  D +   L
Sbjct: 229 PEGISRATTSTVVQSSLAVLALDFLLTAL 257