Pairwise Alignments

Query, 473 a.a., DEAD/DEAH box helicase from Cupriavidus basilensis FW507-4G11

Subject, 637 a.a., ATP-dependent RNA helicase DeaD (RefSeq) from Shewanella amazonensis SB2B

 Score =  300 bits (769), Expect = 7e-86
 Identities = 160/374 (42%), Positives = 229/374 (61%), Gaps = 3/374 (0%)

Query: 17  SFSKLPLSPATLATLEQLGYQTMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFALALLN 76
           +F +L L+ + L  L++LGY+T TPIQAAS+   ++GQD++ QA+TG+GKT AFAL LL 
Sbjct: 7   TFRELGLTESVLRALDELGYETPTPIQAASIQPLMSGQDILGQAQTGTGKTGAFALPLLC 66

Query: 77  RLDARRFDVQALVLCPTRELADQVTQEIRRLARAEENIKILTLCGGSPMRPQADSLAHGA 136
            +DA     Q LVL PTRELA QV +     A+  +   +L + GG  M  Q  +L  G 
Sbjct: 67  SVDANLNAPQILVLAPTRELAVQVAEAFTSYAKHMKGFHVLPIYGGQSMYQQLQALRRGP 126

Query: 137 HIAVGTPGRIMDHLERGTLNLDALNTLVLDEADRMLDMGFFDDIAYVASHCPKERQTLLF 196
            + VGTPGR+MDH+ RGTL LD L  LVLDEAD ML MGF DDI ++  H P+ RQ  LF
Sbjct: 127 QVVVGTPGRVMDHMRRGTLKLDTLKALVLDEADEMLKMGFIDDIEWILEHTPESRQLALF 186

Query: 197 SATYPEGIAKLSQQFLRKPREVKLEEQHDD-SKIRQRFFEVADSDRLNAVGLLLNHFRPV 255
           SAT PE I +++ + LR P  + +   H     I QRF +V+  ++L A+  +L      
Sbjct: 187 SATMPEQIKRVANKHLRNPVNISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVENTE 246

Query: 256 STLAFCNTKARCRDLVDLLRAQGFEALALHGELDQRERDQVLVQFANRSCSVLVATDVAA 315
             + F  T+  C +L + L A+G+ A  LHG+++Q+ R++ + Q  +    +L+ATDVAA
Sbjct: 247 GIIIFVRTRNSCMELAEKLEARGYAASPLHGDMNQQARERAVDQLKSGKLDILIATDVAA 306

Query: 316 RGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGNIEQAMGA 375
           RGLD+ ++  V+N D+  D E YVHRIGRTGRA + G A+   +  EM  +  IE+A  +
Sbjct: 307 RGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNS 366

Query: 376 EMEWQPLSDLTPAS 389
            +   P+   +P S
Sbjct: 367 RI--SPMKIPSPES 378



 Score = 35.4 bits (80), Expect = 6e-06
 Identities = 19/65 (29%), Positives = 33/65 (50%)

Query: 405 GRKEKMRPGDILGALTGDAGYAKHQIGKINVMDMSTYVAVERSIGREAMRKLNDGTVKGK 464
           GR   +  G+I+GA+  +A      IG+I + D  T V +   + +E ++ L    V GK
Sbjct: 501 GRDHNVGVGNIVGAIANEANIDSRYIGQIQLYDAVTTVDLPDGMPKEVLQHLKKVRVCGK 560

Query: 465 RVKVR 469
            + +R
Sbjct: 561 PLNIR 565