Pairwise Alignments

Query, 473 a.a., DEAD/DEAH box helicase from Cupriavidus basilensis FW507-4G11

Subject, 623 a.a., ATP-dependent RNA helicase DeaD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  293 bits (750), Expect = 1e-83
 Identities = 153/362 (42%), Positives = 226/362 (62%), Gaps = 2/362 (0%)

Query: 17  SFSKLPLSPATLATLEQLGYQTMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFALALLN 76
           +F +L LS   L  L++LGY+  TPIQ+AS+   +AG+D++ QA+TG+GKT AFAL LLN
Sbjct: 7   TFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 77  RLDARRFDVQALVLCPTRELADQVTQEIRRLARAEENIKILTLCGGSPMRPQADSLAHGA 136
           ++ ++    Q LVL PTRELA QV +     A+  +N  +L + GG  M+ Q ++L  G 
Sbjct: 67  KVTSQTTP-QILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGP 125

Query: 137 HIAVGTPGRIMDHLERGTLNLDALNTLVLDEADRMLDMGFFDDIAYVASHCPKERQTLLF 196
            + VGTPGR+MDH+ RGTL L+ L  LVLDEAD ML MGF DDI ++  H P +RQ  LF
Sbjct: 126 QVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLALF 185

Query: 197 SATYPEGIAKLSQQFLRKPREVKLEEQHDD-SKIRQRFFEVADSDRLNAVGLLLNHFRPV 255
           SAT PE I +++ + L+    + +   H     I QRF +V+  ++L A+  +L      
Sbjct: 186 SATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTE 245

Query: 256 STLAFCNTKARCRDLVDLLRAQGFEALALHGELDQRERDQVLVQFANRSCSVLVATDVAA 315
             + F  T+  C +L + L A+G+ +  LHG+++Q+ R++ + Q  N    +L+ATDVAA
Sbjct: 246 GIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAA 305

Query: 316 RGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGNIEQAMGA 375
           RGLD+ ++  V+N D+  D E YVHRIGRTGRA + G A+   +  EM  +  IE+A  +
Sbjct: 306 RGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNS 365

Query: 376 EM 377
            +
Sbjct: 366 RI 367



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 33/65 (50%)

Query: 405 GRKEKMRPGDILGALTGDAGYAKHQIGKINVMDMSTYVAVERSIGREAMRKLNDGTVKGK 464
           GR+  +  G+I+GA+  +A      IG I + D  T V +   + ++ ++ L    V GK
Sbjct: 497 GRENGVGVGNIVGAIANEANIDSRYIGAIQLYDSVTTVDLPDGMPKDVLQHLKKVRVCGK 556

Query: 465 RVKVR 469
            + +R
Sbjct: 557 PLNIR 561