Pairwise Alignments

Query, 473 a.a., DEAD/DEAH box helicase from Cupriavidus basilensis FW507-4G11

Subject, 458 a.a., ATP-dependent RNA helicase DbpA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  462 bits (1190), Expect = e-135
 Identities = 242/456 (53%), Positives = 308/456 (67%), Gaps = 1/456 (0%)

Query: 17  SFSKLPLSPATLATLEQLGYQTMTPIQAASLPIALAGQDLIAQAKTGSGKTAAFALALLN 76
           +FS L L    L  L  +GY  MTPIQA SLP  LAG+D+I Q KTGSGKTAAF L LLN
Sbjct: 2   AFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLN 61

Query: 77  RLDARRFDVQALVLCPTRELADQVTQEIRRLARAEENIKILTLCGGSPMRPQADSLAHGA 136
           +LD +RF +Q LVLCPTRELADQV QEIR LAR   N+K+LTLCGG PM PQ  SL HGA
Sbjct: 62  KLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGA 121

Query: 137 HIAVGTPGRIMDHLERGTLNLDALNTLVLDEADRMLDMGFFDDIAYVASHCPKERQTLLF 196
           HI VGTPGRI+DHL+R  L+L  LN LVLDEADRML+MGF   +  +    P+ERQTLLF
Sbjct: 122 HIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLF 181

Query: 197 SATYPEGIAKLSQQFLRKPREVKLEEQHDDSKIRQRFFEV-ADSDRLNAVGLLLNHFRPV 255
           SAT+PE I  +++Q +  P  VK    H+ + I Q F+++  D  R+ A+ LLL   +P 
Sbjct: 182 SATFPEQIQSIAKQIMYNPVMVKAAVTHEKNTIEQHFYQLDDDKSRMQALQLLLLEHKPE 241

Query: 256 STLAFCNTKARCRDLVDLLRAQGFEALALHGELDQRERDQVLVQFANRSCSVLVATDVAA 315
           S + FCNTK   + + D L   GF  LALHG+L+QR+RD+ L+QFAN+S  VLVATDVAA
Sbjct: 242 SAVVFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSACVLVATDVAA 301

Query: 316 RGLDIAQLEAVINVDVTPDPEVYVHRIGRTGRADQDGWALSLASMNEMGRVGNIEQAMGA 375
           RGLDI  L+AV N  V  D EV++HRIGRTGRA   G A +  +  +  ++  +E+ +  
Sbjct: 302 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQDGYKIALLEEYLDR 361

Query: 376 EMEWQPLSDLTPASNERLLPPMVTLQILGGRKEKMRPGDILGALTGDAGYAKHQIGKINV 435
           E+  + L  L+   +    P M+TLQI GG+KEK+RPGDILGALTGD G    Q+GKI V
Sbjct: 362 EITSESLPSLSLLGSAPNAPTMITLQIDGGKKEKLRPGDILGALTGDNGIEGTQVGKILV 421

Query: 436 MDMSTYVAVERSIGREAMRKLNDGTVKGKRVKVRML 471
            D   YVAV R + ++A+ K+  G +KGK  +  ++
Sbjct: 422 TDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLM 457