Pairwise Alignments

Query, 309 a.a., cation efflux family transporter from Caulobacter crescentus NA1000

Subject, 296 a.a., cation efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  196 bits (498), Expect = 6e-55
 Identities = 111/272 (40%), Positives = 158/272 (58%), Gaps = 1/272 (0%)

Query: 21  SVATAAILIVVKAIAWQASGSVAILASLSDSALDLVASLITVYAVRYAAEPPDAEHRFGH 80
           SVATA  LI +K +AW  SGS ++LASL+DS  D +AS+I   A+RYA  P D +HR+GH
Sbjct: 18  SVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGH 77

Query: 81  GKAEAFSSLMQGGLVFASGALVGREAINAWLHPQPVEHGLAGVAVMAISIVLTLALITAQ 140
           GKAE  ++L Q   +  S  L+        L+P PVE+   GV V  ++IVLTLAL+  Q
Sbjct: 78  GKAEPLAALAQSAFIMGSAFLLLFYGGERLLNPSPVENATLGVVVSVVAIVLTLALVLLQ 137

Query: 141 TRVVKASGSIAISGDRAHYAADLASNAVALVGVGAAAWLGLPRVDAAAGLIVALWLIWGA 200
            R + A+ S  +  D  HY +DL  NA  L+ +  + + G    D    +++A ++   A
Sbjct: 138 KRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQY-GWWWADGLFAVLIACYIGQQA 196

Query: 201 VGVFREASHQLMDHELPDADRTKIVALVTADPNVLGVHQLRTRASGPYIHIQMHADLAGD 260
             +   +   L+D EL +  R +I  +   DP VLG+H LRTR +G  + IQ H +L G+
Sbjct: 197 FDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQAGKTVFIQFHLELDGN 256

Query: 261 ISLAEAHAIIVAAENRVLAAFPAADLIIHGDP 292
           +SL EAH+I      RV AAF  A++IIH DP
Sbjct: 257 LSLNEAHSITDTTGLRVKAAFEDAEVIIHQDP 288