Pairwise Alignments

Query, 166 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 247 a.a., RNA polymerase sigma-70 RpoE type from Marinobacter adhaerens HP15

 Score = 45.8 bits (107), Expect = 5e-10
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 28/147 (19%)

Query: 23  ARAFAEAPDQHDLLQELTVALWRARPSFRAESAAGTFAHRVAHNAALTWKRGEVRR---- 78
           +R   ++ +  DL QE  V  +RA   FR +SA  T+ +R+A N A  +     RR    
Sbjct: 91  SRYVYDSQEVMDLTQETFVKAFRAIERFRGDSAFYTWLYRIAVNTAKNYLESRGRRPQGS 150

Query: 79  -------------RLRGVVVEGELLTRDAGTDPQGALLERLYAAIRQLPPVERSLILL-S 124
                        RLR       LL R+        L + L  AI QLP   RS  LL  
Sbjct: 151 ADSAEAENFDDGSRLRDTASPERLLQRE-------QLQKELNKAIAQLPEELRSAFLLRE 203

Query: 125 LDGVGYAEIARLHGLSETNVGARLTRI 151
            DG+ Y +IA   G+ E  +G   +RI
Sbjct: 204 YDGLSYEDIA---GILECPIGTVRSRI 227