Pairwise Alignments

Query, 166 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 178 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 42.4 bits (98), Expect = 4e-09
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 4/124 (3%)

Query: 17  PMLHRTARAFAEAPDQHDLLQELTVALWRARPSFRAESAAGTFAHRVAHNAALTWKRGEV 76
           P+ +   R      D  D+LQE+ + ++R    FR ES+  T+ +R+A N  L       
Sbjct: 29  PIYNYIRRMVVSHEDAEDVLQEVFIRVFRHLDQFRNESSLSTWIYRIATNECLRLLNSRK 88

Query: 77  RRRLRGVVVEGELLTRDAGT---DPQGALLERLYAAIRQLPPVERSLI-LLSLDGVGYAE 132
              +    V+ EL+++   +   D +  L  +   AI  LP  +R +  L   D + Y +
Sbjct: 89  EEVISAEDVQEELMSKLKASDYVDYEDELAVKFQEAILTLPEKQRIVFNLRYYDELEYED 148

Query: 133 IARL 136
           IAR+
Sbjct: 149 IARV 152