Pairwise Alignments

Query, 166 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 190 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 43.9 bits (102), Expect = 2e-09
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 34  DLLQELTVALWRARPSFRAESAAGTFAHRVAHNAALTWKRGEVRRR--LRGVVVEGELLT 91
           DL+QE+ +++W  + +F        + +R  +N AL + R        L G+  E +   
Sbjct: 47  DLVQEVFISVWEGKRTFSDSRELTNYLYRACYNNALLYIRNHQIHDSILNGLPQEEDFED 106

Query: 92  RDA--GTDPQGALLERLYAAIRQLPPVERSLILLSLDGVGYAEIARLHGLSETNVGARLT 149
            +       +   + +LY  I +LP  +R +ILL ++G  + EIA   G+S   V  + +
Sbjct: 107 EEMLYALTVKEEAIRQLYFYIEELPAEQRRIILLRIEGHSWDEIASRLGVSINTVKTQKS 166

Query: 150 R 150
           R
Sbjct: 167 R 167