Pairwise Alignments

Query, 166 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 158 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 62.4 bits (150), Expect = 3e-15
 Identities = 40/132 (30%), Positives = 73/132 (55%), Gaps = 6/132 (4%)

Query: 28  EAPDQHDLLQELTVALWRARPSFRAESAAGTFAHRVAHNAALTWKRGEVRRRLRGV-VVE 86
           ++ + +DL Q++ V LW+   +F+ ES  GT+  RV+ N  ++  R   ++++  V ++ 
Sbjct: 29  DSREVNDLFQDVLVNLWKGFDTFKGESNIGTWIWRVSLNTCISSDR---KKKIVSVPLIM 85

Query: 87  GELLTRDAGTDPQGALLERLYAAIRQLPPVERSLILLSLDGVGYAEIARLHGLSETNVGA 146
           G  L  D   D     ++ LY  I +L   +R+++LL L+   Y EIA + G+S  NV  
Sbjct: 86  GIDLFEDRDEDT--TQIKMLYNRISRLKHFDRAIVLLWLENFSYEEIAAIVGISVKNVSV 143

Query: 147 RLTRIRQRVSSL 158
           RL RI++ +  +
Sbjct: 144 RLFRIKEELKKM 155